Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03667 662 / 0 Asparagine synthase family protein (.1) AT3G47340 54 / 2e-07 AT-ASN1, DIN6, ASN1 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) AT5G65010 48 / 1e-05 ASN2 asparagine synthetase 2 (.1.2) AT5G10240 48 / 2e-05 ASN3 asparagine synthetase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004643 [exp] 1038 / 0 AT2G03667 690 / 0.0 Asparagine synthase family protein (.1) Lus10042281 [exp] 50 / 4e-06 AT3G47340 1068 / 0.0 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) Lus10024052 [exp] 49 / 9e-06 AT5G10240 1013 / 0.0 asparagine synthetase 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G157700 [exp] 764 / 0 AT2G03667 708 / 0.0 Asparagine synthase family protein (.1) Potri.009G072900 [exp] 51 / 2e-06 AT3G47340 1027 / 0.0 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) Potri.001G278400 [exp] 50 / 5e-06 AT3G47340 1018 / 0.0 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00733 [flax] [poplar] Asn_synthase Asparagine synthase
Representative CDS sequence Show only first row Show all	>Lus10026669 pacid=23164271 polypeptide=Lus10026669 locus=Lus10026669.g ID=Lus10026669.BGIv1.0 annot-version=v1.0 ATGTGTGGAATCGCCTTGATCGTCGCCGGCGTTCGTATCGACTTCTCATCTCTAACACCCGATACTCCGCCGTCACTACCTCCAGCTCAACTCAAACCTG CTTCGAGTTTCTCCGTCGAGGACCTCAAATCAGCTCTCCATCGGCGAGGTCCCGACAGCTTGGGCAGCAAGAAGGTCAAGCTCGTCGGAGGAGCAGCTCA TCTATCAGACGGAGGAGATGAGCTGGTTGTTGAAGAACAAGAAGATGATTGCTCTTCCGGTGGGGAGCTTTACTTCATTGGAGCTACGTTGCAGTTGAGG GGGAATCGTCGCGTTATGCAACCGTTCGTGGATTGTTCAAGGAACGTCCTTGTCTTCAACGGTGAGGTCTTTGGAGGAGTTGGAGTCGGTAGAGACGATA ACGATAGCGAAGTTCTTATGCAGACTCTGGAGAATTGCTGCTCCAGTAGTGGGGAATGGAAAAGTTCTGTACTTGAAGTGCTTTCACTGATCAAAGGGCC TTGGGCTATCATCTATTGGCAGGAAAGTTCAAGGACTTTATGGTTTGGTCGAGATGCATTCGGAAGGCGGAGCCTTCTTGTTCACCGGCCAAACGAGATG GATTCTCGTTTCCTGCTTTCGTCCGTTTCACCAATGTCTGATCAGAGTTCTGATGTTGAAGTGAAAGATGGAGCCTCGTCGGATTTTTGGGAGGAGCTCT CCTGTGGAATCTATAGTTGTTCCTTAGATTACAGTTCGCTAGATGGGTGTATAGTTGGCAGTGTTCAAAGACATGAGTGGGCTAACAATGGACTACTGGA GCTCATCAGCTGGGAGAGAACTTCGGTCATTCGGCAAGCAGATGACTTGTACTTTTCCTCAACGGAGACAAGTTTGCAGAAACCAGTACCTGTGCAAACT TCTGTATCAAGGCAGGCTCACAACGTGTTGGAAGCATTGAGGAAGTCTGTAATGTTAAGAACTTCAGAAAATGCCATATTTCAGGAGATGGCAGATGATA GTAATCAAGAAGAATGCGCTCCGATTGCTGTTCTTTTTTCTGGTGGCTTGGATTCTATGATATTAGCTGCATTGCTGGACCAGTCCCTCGATCCGAATTA TGGTATTGATTTGCTAAATGTAAGCTTCGATGGCCAGTCTGCACCTGATAGAATCACTGCCAAGGCAGGCGTGGAGGAACTGGAAAAGATTGCCCCTTCA AGAAGGTGGAAACTTATTGAGATTGATGCTGACTTGTCCAAGTTAACCATGGAGATGAAGCATGTCAGGGAGTTAATTCACCCTGCAAACACTTACATGG ATCTAAATATAGGGACTGCTTTATGGCTGGCTGCCAATGGCGACGGTTGTTGCAAAGTCGAGAATCAACATCGTGTGCAATACAAGTCCCAGGCTAGGAT AGTTCTTGTTGGTTCAGGAGCCGACGAGCAATGTGCTGGATACGGAAGACACAGAACAAAATACAGATGTGGAAGTTGGCTTGGCCTTCATGAGGAGATG AAACTGGACATGCAAAGGATATGGAAACGAAACATGGGCAGGGACGATCGATGTATTGCAGACAATGGAAAGGAGGCTAGGTTCCCATTCCTTGACGAAG ATGTCATCAAAACTCTCCTCGAGATCCCGTTATGGGAAGTTGCGAATCTAGATGAACCAAGTGGAGTTGGGGATAAAAAGATCTTGAGAGAGGTTGCACG ATTGCTTGGCTTGCAAGAAGCATCTGTCCTCCCTAAGAGAGCAATCCAGTTCGGGTCGAGAATTGCTCGAGAATCGAATCGGAAGAATTTCGGAAGCAAC CGTGCTGCTAACCAGGCATCTGCTGGAAGTGTAGTGATTAACAATGAAGTTTGA
AA sequence Show only first row Show all	>Lus10026669 pacid=23164271 polypeptide=Lus10026669 locus=Lus10026669.g ID=Lus10026669.BGIv1.0 annot-version=v1.0 MCGIALIVAGVRIDFSSLTPDTPPSLPPAQLKPASSFSVEDLKSALHRRGPDSLGSKKVKLVGGAAHLSDGGDELVVEEQEDDCSSGGELYFIGATLQLR GNRRVMQPFVDCSRNVLVFNGEVFGGVGVGRDDNDSEVLMQTLENCCSSSGEWKSSVLEVLSLIKGPWAIIYWQESSRTLWFGRDAFGRRSLLVHRPNEM DSRFLLSSVSPMSDQSSDVEVKDGASSDFWEELSCGIYSCSLDYSSLDGCIVGSVQRHEWANNGLLELISWERTSVIRQADDLYFSSTETSLQKPVPVQT SVSRQAHNVLEALRKSVMLRTSENAIFQEMADDSNQEECAPIAVLFSGGLDSMILAALLDQSLDPNYGIDLLNVSFDGQSAPDRITAKAGVEELEKIAPS RRWKLIEIDADLSKLTMEMKHVRELIHPANTYMDLNIGTALWLAANGDGCCKVENQHRVQYKSQARIVLVGSGADEQCAGYGRHRTKYRCGSWLGLHEEM KLDMQRIWKRNMGRDDRCIADNGKEARFPFLDEDVIKTLLEIPLWEVANLDEPSGVGDKKILREVARLLGLQEASVLPKRAIQFGSRIARESNRKNFGSN RAANQASAGSVVINNEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03667			Asparagine synthase family pro...		Lus10026669 [exp]	0	1
AT5G52950			unknown protein		Lus10027565 [exp]	8.2	0.7739
AT5G50340			ATP-dependent peptidases;nucle...		Lus10038258 [exp]	10.9	0.7492
AT2G47460	MYB	PFG1, ATMYB12	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10036336 [exp]	15.6	0.6814
AT1G79950			RAD3-like DNA-binding helicase...		Lus10037532 [exp]	18.1	0.7694
AT3G57000			nucleolar essential protein-re...		Lus10032054 [exp]	25.5	0.7654
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10015357 [exp]	28.8	0.7617
AT1G33420			RING/FYVE/PHD zinc finger supe...		Lus10039160 [exp]	29.3	0.7190
AT4G28450			nucleotide binding;protein bin...		Lus10037378 [exp]	31.8	0.7166
AT4G32400		EMB42, EMB104, ...	SODIUM HYPERSENSITIVE 1, EMBRY...		Lus10030076 [exp]	41.7	0.7062
AT4G18820			AAA-type ATPase family protein...		Lus10007316 [exp]	43.3	0.7256

Compare expression of checked genes

Lus10026669 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.