Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03690 376 / 3e-134 coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026673 [exp] 444 / 5e-161 AT2G03690 403 / 1e-144 coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G097100 [exp] 390 / 9e-140 AT2G03690 367 / 1e-130 coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein (.1) Potri.010G157500 [exp] 377 / 2e-134 AT2G03690 367 / 2e-130 coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05019 [flax] [poplar] Coq4 Coenzyme Q (ubiquinone) biosynthesis protein Coq4
Representative CDS sequence Show only first row Show all	>Lus10026671 pacid=23164212 polypeptide=Lus10026671 locus=Lus10026671.g ID=Lus10026671.BGIv1.0 annot-version=v1.0 ATGATTGTACAAGGCGGTCGTGTGCGGCTGAAGCGGTGGCAGCGGGCGGCGGTGGCGGTGGGATCGGCGGTGGGGGCATTGCTGGATCCGAGGAGAGCGG ATTTGATCGGAGCTCTTGGCGAAACAACTGGGAAGCCTGCTTTCGAGAGGGTTCTAGAGAGGATGAAGCAAAGCCCTGAAGGAAGAGAAGTGCTTTCGGA CAGACCTCGAGTAATATCGTCACAAGTCGGACACGCATGGGACCTACCGGAGAACACATTCGGAGCAGCCTACGCAAGGTTTATGGGATCGAGAAACTTC TCCCCCGATGATCGCCCCCCGGTGAGGTTCATGGAGACAGACGAGCTTGCGTACGTTGCTACGCGGGCTCGAGAGGTCCACGACTTCTGGCACACCCTCT TCGGCCTAAACACCAACTTGATCGGCGAATCTGCACTCAAGGTGATCGAGTTCCGGCAAATGTACCTCCCAATGTGTTTTATGTCGGTTGTCGGTGGTAC GGTGAGGTTCAGTGAGAAGCAGAGGAAGCTGTTCTTCAAGCACTACTTCCCCTGGGCGGCTCGCGCTGGAACGCAGTGCACGGATCTCATGTGCATATAC TACGAAAAGCATTTCGACGAGGATTTGGAGGACGTTCGTCGCAAATGGGGGATCATTCCTGCTCCTGCTGTGTCTGTCCCCAAGTAG
AA sequence Show only first row Show all	>Lus10026671 pacid=23164212 polypeptide=Lus10026671 locus=Lus10026671.g ID=Lus10026671.BGIv1.0 annot-version=v1.0 MIVQGGRVRLKRWQRAAVAVGSAVGALLDPRRADLIGALGETTGKPAFERVLERMKQSPEGREVLSDRPRVISSQVGHAWDLPENTFGAAYARFMGSRNF SPDDRPPVRFMETDELAYVATRAREVHDFWHTLFGLNTNLIGESALKVIEFRQMYLPMCFMSVVGGTVRFSEKQRKLFFKHYFPWAARAGTQCTDLMCIY YEKHFDEDLEDVRRKWGIIPAPAVSVPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03690			coenzyme Q biosynthesis Coq4 f...		Lus10026671 [exp]	0	1
AT2G46800		ATMTP1, ZAT1, Z...	ZINC TRANSPORTER OF ARABIDOPSI...		Lus10030192 [exp]	2.8	0.9167
AT5G64510		TIN1	tunicamycin induced 1, unknown...		Lus10020502 [exp]	3.9	0.9213
AT2G03690			coenzyme Q biosynthesis Coq4 f...		Lus10026673 [exp]	6.5	0.8999
AT3G10020			unknown protein		Lus10003372 [exp]	7.5	0.9192
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Lus10029987 [exp]	8.9	0.9028
AT3G61550			RING/U-box superfamily protein...		Lus10036404 [exp]	9.4	0.8659
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10023418 [exp]	9.5	0.9171
AT1G52690		LEA7	LATE EMBRYOGENESIS ABUNDANT 7,...		Lus10013489 [exp]	10.7	0.8720
AT2G31670			Stress responsive alpha-beta b...		Lus10017873 [exp]	11.0	0.9021
AT3G24500		MBF1C, ATMBF1C	multiprotein bridging factor 1...		Lus10034592 [exp]	12.0	0.9155

Compare expression of checked genes

Lus10026671 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.