Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03690 382 / 1e-136 coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026671 [exp] 444 / 5e-161 AT2G03690 397 / 2e-142 coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G097100 [exp] 391 / 6e-140 AT2G03690 367 / 1e-130 coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein (.1) Potri.010G157500 [exp] 379 / 2e-135 AT2G03690 367 / 2e-130 coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05019 [flax] [poplar] Coq4 Coenzyme Q (ubiquinone) biosynthesis protein Coq4
Representative CDS sequence Show only first row Show all	>Lus10026673 pacid=23164311 polypeptide=Lus10026673 locus=Lus10026673.g ID=Lus10026673.BGIv1.0 annot-version=v1.0 ATGATTGTACAAGGCGGTCGGGTGCCGTTGAAGCGGTGGCAGCAGGCGGCGGTGGCGGTGGGATCGGCGGTGGGGGCATTGCTGGATCCGAGGAGAGCGG ATTTGATCGGAGCTCTTGGCGAAACAACTGGGAAGCCTGCTTTCGAGAGGGTTCTAGAGAGGATGAAGCAAAGCCCTGAAGGAAGAGAAGTGCTTTCGGA CAGACCTCGAGTAATATCGTCACAAGTCGGACACGCATGGGACCTACCGGAGAACACATTCGGAGCAGCCTACGCAAGGTTTATGGGATCGAGAAACTTC TCCCCCGATGATCGCCCCCCGGTGAGGTTCATGGAGACAGACGAGCTTGCGTACGTTGCTACGCGGGCTCGAGAGGTCCACGACTTCTGGCACACCCTCT TCGGCCTAAACACCAACTTGATCGGCGAATCTGCACTCAAGGTGATCGAGTTCCGGCAAATGTACCTCCCGATGTGTCTTATGTCGGTTGTTGGTGGGAC GGTGAGGTTCAGTGAGAAGCAGAGGAAGCTGTTCTTCAAGCACTACTTCCCCTGGGCGGCTCGCGCTGGAACGCAGTGCACGGATCTCATGTGCATATAC TACGAAAAGCATTTCGACGAGGATTTGGAGGACGTTCGTCGCAAATGGGGGATCATTCCTGCTCCTGCTGTGTCTGTCCCCAAGTAG
AA sequence Show only first row Show all	>Lus10026673 pacid=23164311 polypeptide=Lus10026673 locus=Lus10026673.g ID=Lus10026673.BGIv1.0 annot-version=v1.0 MIVQGGRVPLKRWQQAAVAVGSAVGALLDPRRADLIGALGETTGKPAFERVLERMKQSPEGREVLSDRPRVISSQVGHAWDLPENTFGAAYARFMGSRNF SPDDRPPVRFMETDELAYVATRAREVHDFWHTLFGLNTNLIGESALKVIEFRQMYLPMCLMSVVGGTVRFSEKQRKLFFKHYFPWAARAGTQCTDLMCIY YEKHFDEDLEDVRRKWGIIPAPAVSVPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03690			coenzyme Q biosynthesis Coq4 f...		Lus10026673 [exp]	0	1
AT3G15610			Transducin/WD40 repeat-like su...		Lus10019450 [exp]	3.7	0.8827
AT3G48700		ATCXE13	carboxyesterase 13 (.1)		Lus10012073 [exp]	4.4	0.9155
AT1G76060		EMB1793	EMBRYO DEFECTIVE 1793, LYR fam...		Lus10005621 [exp]	4.5	0.8784
AT2G03690			coenzyme Q biosynthesis Coq4 f...		Lus10026671 [exp]	6.5	0.8999
AT2G46800		ATMTP1, ZAT1, Z...	ZINC TRANSPORTER OF ARABIDOPSI...		Lus10030192 [exp]	8.1	0.8932
AT5G64510		TIN1	tunicamycin induced 1, unknown...		Lus10020502 [exp]	9.2	0.9029
AT3G07090			PPPDE putative thiol peptidase...		Lus10038168 [exp]	9.4	0.8806
AT3G61770			Acid phosphatase/vanadium-depe...		Lus10030253 [exp]	9.8	0.8834
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10015944 [exp]	9.9	0.8792
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Lus10025470 [exp]	10.2	0.8993

Compare expression of checked genes

Lus10026673 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.