Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69210 241 / 6e-80 Uncharacterised protein family UPF0090 (.1.2) AT1G77122 152 / 8e-45 Uncharacterised protein family UPF0090 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014566 [exp] 184 / 3e-59 AT1G69210 120 / 7e-34 Uncharacterised protein family UPF0090 (.1.2) Lus10018923 [exp] 153 / 8e-45 AT1G77122 283 / 1e-93 Uncharacterised protein family UPF0090 (.1) Lus10028624 [exp] 149 / 4e-43 AT1G77122 283 / 1e-93 Uncharacterised protein family UPF0090 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G157300 [exp] 286 / 2e-97 AT1G69210 239 / 8e-78 Uncharacterised protein family UPF0090 (.1.2) Potri.002G071700 [exp] 153 / 2e-45 AT1G77122 271 / 6e-90 Uncharacterised protein family UPF0090 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02576 [flax] [poplar] DUF150 RimP N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10026674 pacid=23164373 polypeptide=Lus10026674 locus=Lus10026674.g ID=Lus10026674.BGIv1.0 annot-version=v1.0 ATGAGCAGCGACGAAGAATCAGATGGATGGGAAGAGGAGGAGGAAGCTGAACCAAAGGTTGGAGATGGAGGATCAGGAGGTGGCATTGTGTTCCAAGGTG TTCCGTGGGGTGAACGAGCTCTCGCCATTGCTCGGGAGGTGTTGGAGCAGTTCGGTGTTGATGACGTTGAGCTCTTCTCTTTCAAGACCACTCCTCGTGG ATATATCTATCTGAGGCTCGATAAATTGTCCAGCGAATATGGTTGCCCCGGGATTGAGGAACTCGAAAGCTATTGTAGAAAATACAACAAGAGATTGGAG GAAGTTGGAGCTCTCGGCAAAATCCCTGATAATCTGGCGGTTGAGGTATCCTCTCCAGGTGCTGATAGACTACTGAAGGTACCGGACGATCTGGACCGGT TCAAGGACATGGCCATGAACGTGTGCTACACAGAAGACGAGAAGGAGTCCAATCGTCAAGCCGAAAAGAATGGAGTCTTCTTCTTGGAGTCCATAGACAC TGAAACGGAGAACTGCGTGTGGAAGTTGGCAGATGTGAAGGAGAACAGAGACCCTCTGAGCAAAGGGAGACCTTTAAACCGGAAGCGACGAGACTGGAGA CTCACATTGCCTTTTCAAATGCATACCAAGGTTACCTTGTATATCGAGTTCTAA
AA sequence Show only first row Show all	>Lus10026674 pacid=23164373 polypeptide=Lus10026674 locus=Lus10026674.g ID=Lus10026674.BGIv1.0 annot-version=v1.0 MSSDEESDGWEEEEEAEPKVGDGGSGGGIVFQGVPWGERALAIAREVLEQFGVDDVELFSFKTTPRGYIYLRLDKLSSEYGCPGIEELESYCRKYNKRLE EVGALGKIPDNLAVEVSSPGADRLLKVPDDLDRFKDMAMNVCYTEDEKESNRQAEKNGVFFLESIDTETENCVWKLADVKENRDPLSKGRPLNRKRRDWR LTLPFQMHTKVTLYIEF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69210			Uncharacterised protein family...		Lus10026674 [exp]	0	1
AT4G26780		MGE2, AR192	mitochondrial GrpE 2, Co-chape...		Lus10032565 [exp]	1.4	0.8615
AT2G20770		GCL2	GCR2-like 2 (.1)		Lus10033701 [exp]	2.2	0.8205
AT1G62260		MEF9	mitochondrial editing factor 9...		Lus10022656 [exp]	3.3	0.8055
AT3G08000			RNA-binding (RRM/RBD/RNP motif...		Lus10031534 [exp]	3.9	0.8517
AT5G25500			unknown protein		Lus10002897 [exp]	5.4	0.8691
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10015091 [exp]	6.9	0.7948
AT3G46870			Pentatricopeptide repeat (PPR)...		Lus10040756 [exp]	7.7	0.7922
AT4G15910		ATDI21	drought-induced 21 (.1)		Lus10037497 [exp]	8.5	0.7357
AT5G66500			Tetratricopeptide repeat (TPR)...		Lus10041770 [exp]	10.4	0.8220
AT3G23710		AtTic22-III	translocon at the inner envelo...		Lus10022378 [exp]	12.2	0.7950

Compare expression of checked genes

Lus10026674 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.