Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69160 57 / 3e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004639 [exp] 359 / 6e-124 AT1G69160 55 / 4e-08 unknown protein Lus10019172 [exp] 110 / 5e-28 AT1G69160 94 / 6e-22 unknown protein Lus10036813 [exp] 98 / 1e-23 AT1G69160 80 / 4e-17 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G154200 [exp] 72 / 3e-14 AT1G69160 114 / 2e-29 unknown protein Potri.008G098200 [exp] 68 / 7e-13 AT1G69160 134 / 2e-36 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026677 pacid=23164288 polypeptide=Lus10026677 locus=Lus10026677.g ID=Lus10026677.BGIv1.0 annot-version=v1.0 ATGTCTGCAACAGGGCTCTCACCACAATCATCATCTTCGTCATCGTCGAAGCTCTTCAACAACAACAAACCATTCCACCACAGGAACAGCTCGGCGGAGC TCGACGTGTTCGAGGCGGCCAACTACTTTTCGGGCTACTACAATGAGGTCCCGTCCCACTACACAATCACAAACAACAACAAAGTCATAGCCAGGGGAGC ACCGGCCGGTAGAAGGATGAGCTTGGACAATGGGATGATCCACACCACCCAAATCATCATCAAGGACAACAACATTAAAAATGTTGGTAGTAGTAATACT AATGGCAAGCAGCATAAGCAGCCTAGCTCGCCAGGAGCCAGGTTGGCGAGCTTTTTGAACCAGTTATTCCATCACGGCGGAACTACGGGTTCAGGTTTGA ATAAGAATAAGACGAAGAAGTCGAAACCTCCGACAAAGGATGAGGATCATGAGATGGTCAATGCTAATGGTGGAGGGAGGAGGAAGAGGAGGAGTAGTAT TAGTAACATCACAAGGTCATGGTACTATAGTACTAGCACCGGTACCGGTACTAGTACTTGTACATCATCTTCCTCAGCTCATCCTCCTCCTCAACCAGCT GCTAATTACAGTCTTCCAAGTAAAGCAAACAAAGGCTTCAATCAGAAGGCAGTTTCTCCATTGCCAATTAAGAGTAATGGTGGAATGGTGGATGAGAAGG TGGCTAATTATAAAGGTGCCAGGAGTTTGAACAACGGCCATGGTGATGGATATGAGAGCGACTCAAGCTCCGATCTTTTCGAGTTGCAAAACTACGACTC CGATGTGTACTCGAATGGCGGGCTACCGGTCTATGACACAACAGATGTTGTTAGTAGGGTCAGTGCAAGTACCATATCGTGA
AA sequence Show only first row Show all	>Lus10026677 pacid=23164288 polypeptide=Lus10026677 locus=Lus10026677.g ID=Lus10026677.BGIv1.0 annot-version=v1.0 MSATGLSPQSSSSSSSKLFNNNKPFHHRNSSAELDVFEAANYFSGYYNEVPSHYTITNNNKVIARGAPAGRRMSLDNGMIHTTQIIIKDNNIKNVGSSNT NGKQHKQPSSPGARLASFLNQLFHHGGTTGSGLNKNKTKKSKPPTKDEDHEMVNANGGGRRKRRSSISNITRSWYYSTSTGTGTSTCTSSSSAHPPPQPA ANYSLPSKANKGFNQKAVSPLPIKSNGGMVDEKVANYKGARSLNNGHGDGYESDSSSDLFELQNYDSDVYSNGGLPVYDTTDVVSRVSASTIS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69160			unknown protein		Lus10026677 [exp]	0	1
AT4G01030			pentatricopeptide (PPR) repeat...		Lus10040917 [exp]	4.2	0.8490
AT1G09940		HEMA2	Glutamyl-tRNA reductase family...		Lus10042932 [exp]	6.5	0.8196
AT4G01030			pentatricopeptide (PPR) repeat...		Lus10009813 [exp]	8.0	0.8238
AT4G36040		J11	DnaJ11, Chaperone DnaJ-domain ...		Lus10025060 [exp]	10.4	0.7743
AT1G16250			Galactose oxidase/kelch repeat...		Lus10002112 [exp]	20.3	0.7482
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Lus10020727 [exp]	20.4	0.7515
AT1G79440		ENF1, SSADH1, A...	SUCCINIC SEMIALDEHYDE DEHYDROG...		Lus10001845 [exp]	21.7	0.6615
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Lus10029422 [exp]	29.2	0.7447
AT4G15520			tRNA/rRNA methyltransferase (S...		Lus10034004 [exp]	35.2	0.6928
AT1G25440	CO	COL16	B-box type zinc finger protein...		Lus10041449 [exp]	38.6	0.7308

Compare expression of checked genes

Lus10026677 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.