Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15800 226 / 1e-74 MADS AGL2, SEP1 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) AT3G02310 223 / 2e-73 MADS AGL4, SEP2 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) AT2G03710 223 / 3e-73 MADS AGL3, SEP4 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3) AT1G24260 219 / 7e-72 MADS AGL9, SEP3 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) AT2G45650 174 / 3e-54 MADS AGL6 AGAMOUS-like 6 (.1) AT1G26310 170 / 1e-52 MADS CAL1, AGL10, CAL CAULIFLOWER, AGAMOUS-like 10, K-box region and MADS-box transcription factor family protein (.1) AT1G69120 170 / 1e-52 MADS AGL7, AP1 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) AT5G60910 162 / 7e-50 MADS FUL, AGL8 FRUITFULL, AGAMOUS-like 8 (.1.2) AT3G58780 152 / 7e-46 MADS AGL1, SHP1 SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3) AT3G61120 152 / 8e-46 MADS AGL13 AGAMOUS-like 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004638 [exp] 412 / 2e-148 AT3G02310 246 / 2e-82 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10034663 [exp] 234 / 9e-78 AT5G15800 267 / 4e-90 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10005080 [exp] 219 / 8e-72 AT3G02310 372 / 1e-131 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10003125 [exp] 213 / 2e-70 AT1G24260 290 / 9e-101 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10034371 [exp] 214 / 1e-69 AT3G02310 364 / 3e-128 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10003124 [exp] 211 / 9e-69 AT1G24260 355 / 6e-125 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10037040 [exp] 207 / 5e-67 AT1G24260 350 / 7e-123 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10015765 [exp] 205 / 2e-66 AT1G24260 347 / 5e-122 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10026679 [exp] 171 / 3e-53 AT1G69120 338 / 1e-118 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G098400 [exp] 253 / 3e-85 AT5G15800 275 / 2e-93 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Potri.001G058400 [exp] 216 / 5e-71 AT1G24260 362 / 8e-128 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.004G115500 [exp] 215 / 2e-70 AT3G02310 357 / 4e-126 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Potri.003G169600 [exp] 214 / 2e-70 AT1G24260 359 / 7e-127 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.017G099700 [exp] 213 / 1e-69 AT3G02310 372 / 8e-132 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Potri.014G074100 [exp] 189 / 4e-60 AT2G45650 311 / 5e-108 AGAMOUS-like 6 (.1) Potri.015G134800 [exp] 175 / 1e-54 AT2G45650 209 / 2e-67 AGAMOUS-like 6 (.1) Potri.012G062300 [exp] 173 / 4e-54 AT5G60910 288 / 5e-99 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.010G154100 [exp] 170 / 8e-53 AT1G69120 324 / 7e-113 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Potri.008G098500 [exp] 166 / 2e-51 AT1G69120 336 / 9e-118 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01486 [flax] [poplar] K-box K-box region PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10026678 pacid=23164336 polypeptide=Lus10026678 locus=Lus10026678.g ID=Lus10026678.BGIv1.0 annot-version=v1.0 ATGGGGAGAGGGAGAGTGGAGCTGAAGAGGATAGAGAACAAGATCAACAGACAAGTCACATTTGCAAAGAGGAGGAATGGTCTACTAAAAAAAGCTTATG AGCTCTCTGTGCTTTGTGATGCTGAGGTTGCTCTCATCCTCTTCTCCAGCCGTGGCAAGCTCTACGAGTTCTGCAGCTCCTCCAGTATGGTGAAGACCAT AGAGAAGTATCAAAGGTACACCTATGGACAACTAGAACCAAGCCAAACTTCTAAGGAGACCCAGAATAATTATCAGGATTATTTGAAGCTAAAAGAGAAG GCGGAGGACCTTAAACGATCCCAAAGGCATCTTCTTGGAGAGGAGTTGGGGAACTTGGGGGCCAAGGAGTTGGACGAAATGGAGAATCAGCTTGATGGGT CTCTCAAGGAAATAAGACTTGTCAAGACTCAATTGATTGCAGATCAGCTCTCAAACCTTAAACAAAAGTTGGAGGAGACAGATGCAGCCATGAGACATCC AACATGGGAAGTTGGGGAACACTCAGCTGATCAGCAGCCACGTCAGCAGATAATAACAACAGAGAAACCTTCTGCTTCTTCAGCTGTTGCAGAAACTGTG ATGATCAATGGCGGATCGGGAGCTCTCATCGGCCGCCCTCCATGGATGCTTTAG
AA sequence Show only first row Show all	>Lus10026678 pacid=23164336 polypeptide=Lus10026678 locus=Lus10026678.g ID=Lus10026678.BGIv1.0 annot-version=v1.0 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALILFSSRGKLYEFCSSSSMVKTIEKYQRYTYGQLEPSQTSKETQNNYQDYLKLKEK AEDLKRSQRHLLGEELGNLGAKELDEMENQLDGSLKEIRLVKTQLIADQLSNLKQKLEETDAAMRHPTWEVGEHSADQQPRQQIITTEKPSASSAVAETV MINGGSGALIGRPPWML

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15800	MADS	AGL2, SEP1	SEPALLATA1, AGAMOUS-like 2, K-...		Lus10026678 [exp]	0	1
					Lus10040835 [exp]	4.4	0.7427
AT4G35420		TKPR1, DRL1	tetraketide alpha-pyrone reduc...		Lus10006141 [exp]	5.7	0.7340
AT1G63820			CCT motif family protein (.1)		Lus10024655 [exp]	8.4	0.7165
					Lus10041320 [exp]	8.8	0.7290
AT5G45840			Leucine-rich repeat protein ki...		Lus10007281 [exp]	8.9	0.7228
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10001886 [exp]	9.2	0.7251
AT2G33810	SBP	SPL3	squamosa promoter binding prot...		Lus10013999 [exp]	12.0	0.7129
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10029335 [exp]	13.0	0.6631
AT1G65810			P-loop containing nucleoside t...		Lus10035774 [exp]	13.9	0.7171
AT1G63060			unknown protein		Lus10001796 [exp]	14.1	0.6847

Compare expression of checked genes

Lus10026678 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.