Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69120 328 / 1e-114 MADS AGL7, AP1 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) AT1G26310 291 / 3e-100 MADS CAL1, AGL10, CAL CAULIFLOWER, AGAMOUS-like 10, K-box region and MADS-box transcription factor family protein (.1) AT5G60910 255 / 4e-86 MADS FUL, AGL8 FRUITFULL, AGAMOUS-like 8 (.1.2) AT3G30260 196 / 7e-63 MADS AGL79 AGAMOUS-like 79 (.1) AT1G24260 183 / 1e-57 MADS AGL9, SEP3 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) AT5G15800 173 / 1e-53 MADS AGL2, SEP1 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) AT3G02310 168 / 1e-51 MADS AGL4, SEP2 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) AT2G45650 159 / 2e-48 MADS AGL6 AGAMOUS-like 6 (.1) AT2G03710 157 / 3e-48 MADS AGL3, SEP4 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3) AT3G61120 150 / 6e-45 MADS AGL13 AGAMOUS-like 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004637 [exp] 403 / 4e-145 AT1G69120 318 / 2e-111 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10007983 [exp] 273 / 1e-92 AT5G60910 298 / 3e-102 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10021140 [exp] 271 / 4e-92 AT5G60910 291 / 1e-99 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10017871 [exp] 266 / 2e-91 AT1G69120 264 / 2e-90 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10034662 [exp] 262 / 9e-89 AT5G60910 284 / 3e-97 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10034370 [exp] 220 / 2e-72 AT1G69120 224 / 1e-73 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10005081 [exp] 220 / 1e-71 AT1G69120 223 / 1e-72 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10034663 [exp] 180 / 4e-56 AT5G15800 267 / 4e-90 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10004638 [exp] 175 / 1e-54 AT3G02310 246 / 2e-82 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G098500 [exp] 323 / 8e-113 AT1G69120 336 / 9e-118 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Potri.010G154100 [exp] 313 / 6e-109 AT1G69120 324 / 7e-113 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Potri.012G062300 [exp] 271 / 2e-92 AT5G60910 288 / 5e-99 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.017G099800 [exp] 249 / 2e-83 AT5G60910 255 / 7e-86 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.004G115400 [exp] 242 / 9e-81 AT5G60910 230 / 7e-76 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.008G098400 [exp] 189 / 6e-60 AT5G15800 275 / 2e-93 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Potri.003G169600 [exp] 174 / 2e-54 AT1G24260 359 / 7e-127 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.017G099700 [exp] 174 / 5e-54 AT3G02310 372 / 8e-132 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Potri.014G074100 [exp] 173 / 9e-54 AT2G45650 311 / 5e-108 AGAMOUS-like 6 (.1) Potri.004G115500 [exp] 172 / 1e-53 AT3G02310 357 / 4e-126 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01486 [flax] [poplar] K-box K-box region PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10026679 pacid=23164210 polypeptide=Lus10026679 locus=Lus10026679.g ID=Lus10026679.BGIv1.0 annot-version=v1.0 ATGGGGAGAGGGAGAGTTCAGTTGAAGCGGATAGAGAACAAGATCAATAGGCAAGTTACTTTCTCCAAAAGGAGAGCTGGATTACACAAGAAAGCTCATG AGATCTCTGTCCTTTGTGATGCTGAGGTTGCCCTTATTGTCTTCTCCCACAAGGGGAAGCTCTTCGAATACGCCACCGACTCCTGTATGGAGAAGATCCT GGAGAGGTATGAGAGGTATTCCTATGCTGAGAGGCAACTTGTTGCTACCGAGCTCGACTCGCAGGGTAACTGGCTTATGGAGTACAACAGGCTGAAGGCA AAGATTGAACTCTTGCAAAGGAACCACAGGCACTATATGGGAGAGGATCTGGACACCATGAGCACCAAGGAGCTGCAGAACTTGGAGCAGCAGCTTGATT CAGCTCTCAAGAACATCCGAACCCGAAGGAACCAGCTAATGCATGAGTCAATCACAGCCCTTCAGAGAAAGGAGAAGGCAATCCAAGAGCAAAATGATGT TCTAGCCAAGCAGCAAAGCCATTCACCCTATCTTCTTCAGCATCAAAACCCACCACAACAACTCCCTTGCTTAAACGTTGGTGGGAGTTACCAGGAAGAA CATCATCATCAGGGACATGATGCCAGGGGTAGAAATGACCTTGATCTCACCTTGGAACCCATTTACTCCTGCAACCTTGGCTGCTTTGCTGCCTGA
AA sequence Show only first row Show all	>Lus10026679 pacid=23164210 polypeptide=Lus10026679 locus=Lus10026679.g ID=Lus10026679.BGIv1.0 annot-version=v1.0 MGRGRVQLKRIENKINRQVTFSKRRAGLHKKAHEISVLCDAEVALIVFSHKGKLFEYATDSCMEKILERYERYSYAERQLVATELDSQGNWLMEYNRLKA KIELLQRNHRHYMGEDLDTMSTKELQNLEQQLDSALKNIRTRRNQLMHESITALQRKEKAIQEQNDVLAKQQSHSPYLLQHQNPPQQLPCLNVGGSYQEE HHHQGHDARGRNDLDLTLEPIYSCNLGCFAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10026679 [exp]	0	1
AT2G02340		ATPP2-B8	phloem protein 2-B8 (.1)		Lus10025662 [exp]	4.9	1.0000
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Lus10003125 [exp]	5.1	1.0000
AT5G20240	MADS	PI, PISTILLATA	PISTILLATA, K-box region and M...		Lus10029719 [exp]	5.5	0.9991
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000558 [exp]	6.9	1.0000
AT3G51590		LTP12	lipid transfer protein 12 (.1)		Lus10004067 [exp]	8.5	1.0000
AT1G17930			Aminotransferase-like, plant m...		Lus10005482 [exp]	9.8	1.0000
AT4G31880			unknown protein		Lus10026078 [exp]	10.0	0.9598
AT4G18960	MADS	AG	AGAMOUS, K-box region and MADS...		Lus10007324 [exp]	10.7	0.9903
AT5G15800	MADS	AGL2, SEP1	SEPALLATA1, AGAMOUS-like 2, K-...		Lus10034663 [exp]	10.8	0.9992
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10022473 [exp]	11.0	1.0000

Compare expression of checked genes

Lus10026679 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.