Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22590 62 / 2e-11 PHP, CDC73 PLANT HOMOLOGOUS TO PARAFIBROMIN (.1) AT5G61412 41 / 4e-05 unknown protein AT2G30560 40 / 0.0003 glycine-rich protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041198 [exp] 196 / 3e-61 AT3G22590 547 / 0.0 PLANT HOMOLOGOUS TO PARAFIBROMIN (.1) Lus10021913 [exp] 137 / 5e-39 AT3G22590 516 / 0.0 PLANT HOMOLOGOUS TO PARAFIBROMIN (.1) Lus10010571 [exp] 122 / 3e-33 AT3G22590 526 / 0.0 PLANT HOMOLOGOUS TO PARAFIBROMIN (.1) Lus10004635 [exp] 39 / 0.0001 ND 36 / 2e-04
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G085500 [exp] 89 / 7e-21 AT3G22590 555 / 0.0 PLANT HOMOLOGOUS TO PARAFIBROMIN (.1) Potri.002G247200 [exp] 44 / 7e-06 ND / Potri.010G244000 [exp] 40 / 9e-05 ND / Potri.008G001450 [exp] 40 / 9e-05 ND / Potri.018G015000 [exp] 39 / 0.0001 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026680 pacid=23164304 polypeptide=Lus10026680 locus=Lus10026680.g ID=Lus10026680.BGIv1.0 annot-version=v1.0 ATGTCTGCATCAAAGCAAAACACAAAGACTGAAGAAGACAACAATGGCGGCGAGCTTACAACAACAGAGAAAGTGATCGCTGGAGTGGCCATCGTCGGGG CTGCAGCTCTAGCTTACGGGATATCGAAGCTGTTCGGCTCCGGCTCCGGCGAGAGGAAGACGATGGTAGCTCCTGGAAGAAACGACGGGTCTCTTATCGT CAGAGATGTCTTCGAGAAAGACCCTGCTTCCTACTTTCGTAATCTTCACAAGAAGATTGTTGAATATACCAACGCCCAGCTCAAGCACATCGACTACTTC CAGAGCTGCCGCGCCCTCGGAATCCCCACAATCACTTTCGTCGAGAGGAAGCCCCTTCTCGATTGCTTGACCGGGAAGCTCTCCAATTCTGATGCCGTAG TCTTCCCGCCTCAGCCGCAGCTTCTTCGGCAAGAACAAAATCCTAATTTAGACAGAAATCTGGGTGGTCATGGTTATTACCGTCCCGAGGAAGGAGCACT TGTTGATTCCGTCAACGAAGCCGTGTATACTGCTGGGAATGGTAAACCGGAGGATTATCTTTCTTTGATCTACTCGACGGAAAAGCCGTTGAAGGATAGG GAGTCGTTGTAG
AA sequence Show only first row Show all	>Lus10026680 pacid=23164304 polypeptide=Lus10026680 locus=Lus10026680.g ID=Lus10026680.BGIv1.0 annot-version=v1.0 MSASKQNTKTEEDNNGGELTTTEKVIAGVAIVGAAALAYGISKLFGSGSGERKTMVAPGRNDGSLIVRDVFEKDPASYFRNLHKKIVEYTNAQLKHIDYF QSCRALGIPTITFVERKPLLDCLTGKLSNSDAVVFPPQPQLLRQEQNPNLDRNLGGHGYYRPEEGALVDSVNEAVYTAGNGKPEDYLSLIYSTEKPLKDR ESL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22590		PHP, CDC73	PLANT HOMOLOGOUS TO PARAFIBROM...		Lus10026680 [exp]	0	1
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10023458 [exp]	3.0	0.9854
AT2G40010			Ribosomal protein L10 family p...		Lus10040214 [exp]	4.0	0.9841
AT1G22590	MADS	AGL87	AGAMOUS-like 87 (.1.2)		Lus10023294 [exp]	5.7	0.9819
AT5G51800	Trihelix		Protein kinase superfamily pro...		Lus10031672 [exp]	6.0	0.9833
AT2G40010			Ribosomal protein L10 family p...		Lus10028276 [exp]	6.7	0.9814
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10007351 [exp]	7.3	0.9811
AT3G52610			unknown protein		Lus10014215 [exp]	7.5	0.9801
AT3G58760			Integrin-linked protein kinase...		Lus10037851 [exp]	8.2	0.9100
AT2G17970			2-oxoglutarate (2OG) and Fe(II...		Lus10028670 [exp]	9.1	0.9000
AT5G53950	NAC	ATCUC2, CUC2, A...	CUP-SHAPED COTYLEDON 2, Arabid...		Lus10041924 [exp]	9.4	0.9741

Compare expression of checked genes

Lus10026680 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.