Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14620 322 / 7e-103 CYP72A8 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) AT3G14690 315 / 2e-100 CYP72A15 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) AT3G14640 315 / 2e-100 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1) AT3G14660 315 / 2e-100 CYP72A13 "cytochrome P450, family 72, subfamily A, polypeptide 13", cytochrome P450, family 72, subfamily A, polypeptide 13 (.1) AT3G14630 315 / 3e-100 CYP72A9 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) AT2G26710 314 / 7e-100 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT3G14680 313 / 2e-99 CYP72A14 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) AT3G14610 308 / 6e-98 CYP72A7 "cytochrome P450, family 72, subfamily A, polypeptide 7", cytochrome P450, family 72, subfamily A, polypeptide 7 (.1) AT3G14650 304 / 5e-96 CYP72A11 "cytochrome P450, family 72, subfamily A, polypeptide 11", cytochrome P450, family 72, subfamily A, polypeptide 11 (.1) AT1G75130 296 / 3e-93 CYP721A1 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004633 [exp] 849 / 0 AT2G26710 378 / 4e-126 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10036822 [exp] 639 / 0 AT2G26710 410 / 4e-137 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10036820 [exp] 465 / 1e-158 AT2G26710 397 / 2e-133 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10019184 [exp] 439 / 2e-148 AT3G14680 369 / 2e-122 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) Lus10036942 [exp] 444 / 1e-144 AT2G26710 375 / 2e-119 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10026085 [exp] 425 / 7e-143 AT2G46960 375 / 6e-125 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) Lus10017775 [exp] 420 / 1e-139 AT3G14630 359 / 2e-117 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) Lus10026084 [exp] 412 / 5e-138 AT2G26710 375 / 6e-125 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10036818 [exp] 398 / 2e-132 AT2G26710 369 / 2e-122 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G139300 [exp] 527 / 0 AT2G26710 372 / 1e-123 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.019G071200 [exp] 508 / 2e-175 AT2G26710 346 / 9e-114 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139400 [exp] 505 / 2e-174 AT2G26710 402 / 2e-135 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139200 [exp] 494 / 5e-170 AT2G26710 369 / 6e-123 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139600 [exp] 486 / 7e-167 AT2G26710 395 / 6e-133 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.019G014407 [exp] 479 / 7e-164 AT2G26710 389 / 3e-130 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.011G098800 [exp] 322 / 6e-103 AT3G14690 640 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G101401 [exp] 318 / 1e-101 AT3G14690 613 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G099400 [exp] 317 / 4e-101 AT3G14690 613 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G099800 [exp] 317 / 5e-101 AT3G14690 612 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01997 [flax] [poplar] Translin Translin family PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10026681 pacid=23164222 polypeptide=Lus10026681 locus=Lus10026681.g ID=Lus10026681.BGIv1.0 annot-version=v1.0 ATGTTTACAGCTTCCACGTTGCAGAAGATCGTCCTCGTCATGGCTTCTTCTAAACCCACCACTCACAGACTCCCCAACCTTGCAGGGAACGCCGAAAAGA GGGCTAGAACCGTGACCACCGCAGCCGCGGCGGCGGCGGAGTCTGCTTTCAAGGACCCATTTGCCAATTACGCGGATTACCTCAACAATCTGAATGAGAA AAGGGAGAGAATAGTGAAGGCTAGTAGGGACATAACGATGAACAGCAAGAAGGTTATATTCCAAGTCCACAGAATGAGCAAAAACAATAGAGAGGAAGTT TTGGAGAAGGCACAGAGTGATTTATCTGCTGTAACTCAGCAGTATGTTTCCAGATTGGTGAAGGAGTTGCAAGGGAGTGACTTTTGGAAGTTGAGAAGAG CTTACTCTCCTGGGGTCCAGGAATATGTTGAAGCTGCTACGTTCTGTAATTTCTGCAAGAATGGGACTTTGCTCACTCTTGATGAGATGAATGCTACCCT CTTGCCCCTGAGTGATCCGGCACTCGAGCCTTTGCAAATCAATGTTCTTGATTATCTGCTTGGGGGCGTTATAACTGGACGGATTCACAACCCGTCACCG ATGAGGCTGCCACGGATGAACTTCCTCAACTGGTATGGAACAAAGCCACAGCTAGTAATCACAGATCCAGAGCTAGTGAAAGAGGTTCTAAGCAACAAAG AAGGAACCTTTCCCAAGAAGTTCATCCAAAGCTATGCATATAAGTTCTTAGGAAATGGTCTCTTTGCTTCACAAGGAGAAAAATGGACCAAGATGAGGAA GCTTGCCAACCAAGCCTTCCATGGAGACTGCCTGAAGGCGATGATACCGGCAATGGTTGCAAGTGTCGAGACAATGCTCGCAAAATGGGAAGAAGAGGCA TCGATCGAGATCGATGCCTTCAAGGAGTTCAAGATCCTGACATCGGAGGTGATCTCGAGGACAGCTTTCGGAAGCAGCTACAAAGAGGGCAAGAATGTGT TTGACATGTTGATGCAGCTTGGCAACATTGTGCACCGGAACAACTTCAAAGCCGGGATCCCATCGTTCGGGATCTTCAAGCTCTGGAGAAGTGTGGATGA TGTCGAGTCTGACAGGCTTCAGGTAGCCATTAGAGAAGGGATCATAGAGGTGATAAAAAAGAGGACAAAAGGATCATTTCATGGAAGTGGTGACTTCCTT GGTTCTCTCTTGAATGCATACCATGAAGAAAGTGATAGTCCGAGGAAGATCAGTGTTGATGATTTGATTGATGAGTGCAAGTCATTCTATGTTGGTGGAC ATGAAACAATCACCAACTCGCTGACGTGGACGGTTTTCCTTCTTGCAATTCACACAGAGTGGCAAGACAAGGCTAGAGAAGAAGTGGTGGAGTTGTTTGA CCAAAGGAATCCTTGCCTTGATGGTCTTGCTAGGATGAAGACTATGACAATGATCATCAACGAATCCCTAAGACTCTACCCACCAGCACTAAATCTCACA AGAGAAGTAGAGAAAGAGACCAAGTTGGGGAAGTTCACACTCCCAGCAAAGATGGCACTTAGCCTTCCAATCATAGCAATTCACCACAACCCTTTACTGT GGGGGGAAGACTGCCATCTCTTCAAACCCACTAGGTTTGCAGATGGTGCAGCCAGAGCTGCAACATATCTACCGTTCGGGTTTGGACCGAGGACCTGTGT CGGATCAAGCTTCGCAACAGCCGAGATCAAGATTGCTCTGTCCATGATCCTGCAGAGATTCAGATGGTCACTCTCCCCTTCTTATGTCCACTCACCTTTC CACATGCTCACTATTTGCCCTAAACATGGCCTCCAAATCGTTCTCCACCCGGTCTAG
AA sequence Show only first row Show all	>Lus10026681 pacid=23164222 polypeptide=Lus10026681 locus=Lus10026681.g ID=Lus10026681.BGIv1.0 annot-version=v1.0 MFTASTLQKIVLVMASSKPTTHRLPNLAGNAEKRARTVTTAAAAAAESAFKDPFANYADYLNNLNEKRERIVKASRDITMNSKKVIFQVHRMSKNNREEV LEKAQSDLSAVTQQYVSRLVKELQGSDFWKLRRAYSPGVQEYVEAATFCNFCKNGTLLTLDEMNATLLPLSDPALEPLQINVLDYLLGGVITGRIHNPSP MRLPRMNFLNWYGTKPQLVITDPELVKEVLSNKEGTFPKKFIQSYAYKFLGNGLFASQGEKWTKMRKLANQAFHGDCLKAMIPAMVASVETMLAKWEEEA SIEIDAFKEFKILTSEVISRTAFGSSYKEGKNVFDMLMQLGNIVHRNNFKAGIPSFGIFKLWRSVDDVESDRLQVAIREGIIEVIKKRTKGSFHGSGDFL GSLLNAYHEESDSPRKISVDDLIDECKSFYVGGHETITNSLTWTVFLLAIHTEWQDKAREEVVELFDQRNPCLDGLARMKTMTMIINESLRLYPPALNLT REVEKETKLGKFTLPAKMALSLPIIAIHHNPLLWGEDCHLFKPTRFADGAARAATYLPFGFGPRTCVGSSFATAEIKIALSMILQRFRWSLSPSYVHSPF HMLTICPKHGLQIVLHPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14620		CYP72A8	"cytochrome P450, family 72, s...		Lus10026681 [exp]	0	1
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10041655 [exp]	1.4	0.9520
AT5G22410		RHS18	root hair specific 18 (.1)		Lus10043010 [exp]	2.2	0.9109
AT4G03210		XTH9, EXGT-A6, ...	xyloglucan endotransglucosylas...		Lus10033755 [exp]	2.4	0.9305
					Lus10035046 [exp]	4.2	0.9232
AT2G27550		ATC	centroradialis (.1)		Lus10004886 [exp]	4.5	0.8925
AT1G66520		PDE194	pigment defective 194, formylt...		Lus10000450 [exp]	6.2	0.8835
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10004633 [exp]	8.1	0.9084
AT4G39620		ATPPR5, EMB2453	EMBRYO DEFECTIVE 2453, A. THAL...		Lus10036633 [exp]	9.8	0.9185
AT2G37240			Thioredoxin superfamily protei...		Lus10030907 [exp]	9.9	0.9018
AT5G57180		CIA2	chloroplast import apparatus 2...		Lus10015330 [exp]	11.2	0.8937

Compare expression of checked genes

Lus10026681 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.