Plant FIBer expression Database

Lus10026682 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G03810 64 / 7e-11 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4)
AT1G13650 45 / 5e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004632
[exp]
628 / 0 AT2G03810 102 / 3e-24 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4)
Lus10036829
[exp]
169 / 2e-47 AT2G03810 97 / 7e-22 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4)
Lus10019193
[exp]
140 / 2e-37 AT2G03810 50 / 1e-06 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G138100
[exp]
117 / 2e-28 AT2G03810 93 / 3e-20 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4)
Potri.008G111800
[exp]
114 / 2e-27 AT2G03810 84 / 4e-17 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4)
Potri.015G048400
[exp]
48 / 7e-06 AT2G03810 64 / 6e-11 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4)
PFAM info
Representative CDS sequence
>Lus10026682 pacid=23164335 polypeptide=Lus10026682 locus=Lus10026682.g ID=Lus10026682.BGIv1.0 annot-version=v1.0
ATGTTCTGTCTGTTCATTTTCCATGTTGCAGAAGGTAAACAAGCGTCCCCTAAGTCCGGTAATGAGACATTTCGACAAGACATTGTGAAGGAGAACAACC
AAAAGGGTCTGAAAGTGGAGGAGAAAGGACATGACGTTGTGAAGGACAACAACCAAAAGGGTCTCAAAGTGGAGGAGAAAGACTATGTCGATCGATTTCT
GTGCCAGACGAATGACCAAGCTGGTGATTATAACGATGATCTGACTGACAATAGCAAAGTGGAGTTAGGAAACATCGCCACCAGGGAGGAACATCATGAA
ATGCCTGAAGTGACAATCTGTTACGAGGAGGACGAAATTAGCCACGCGGTGAAGGACATCTGTGTGGACGAGGGAGTGCCTGTGCACGACAAGTTCTTGT
TCGACACGAGTACTATGGATGACTACCTCTCCACATTCTTGCCTCCTGGAAAGGTTATCAAAGGCCAAGAATTGGATAAAGAGCCTGTTATTGTGGATGA
TGTCATTCCTGAAAACCCTCCTGTATCGAAGATTTCGAAAGATAAAGGATCAGAAGATGCTGAGAAGATTCACTCTGTGGAAATCAAGGAGGAAAAGGTT
GAACCTCTGGAGATTCGTTCTGTGGAAATCAAGGAAGAAGAGGTTGATGAATCTTCAGCGAATTTGGCAAGTAATGCACTGAAAAGGAGCCAATCACTTG
GAGATTTGCTGGCTTTACCGGAACCAAGCACGGATGCTACCTGTCCCGAACCGTTCAGCAGTCAAACAAGTGGCAGCATTCGTCGACATGGGCCAGATGA
TAATCCAGACTTATCAGCAGCCACCTCAACTAGTCATGAAGAACTCGAAAATGACAGCAAGGGACCAAGCTCGTCAATGAACTCAATCGCTTCTACATCA
AAGGAACCATCTAATACAGCTGCCACAACAGTCCATGAGAGTGATCAGGAAGCTGAAAGACACAGTATGGATTCCATGTCTGATGACTTGACCAACGAAG
TTGCTGGCCGGTTATCCTTTGACAATCGAGTCAGCAATGCAGCAGAGATCAGGCTCCCTGATCCAGACCATGTACTCAAACCTCAACTGCTCACTTCCAG
CATTGCAGGAACCGACTCGAACCGGATTCGATACAACATTGGCGACTCCTCCCGCTTCTCGGTCGTGGCAGCAACCGAACCGGTCCCTTACTCCGGAAGC
ATATCGATGCGGTCAGACAGCAGCACCACGAGTGCTCGCTCCTTTGCTTTCCCAGTATTGCAATCTGAATGGAACAGCAGCCCGGTGAGGATGGCCAAAG
CTGACCGGAGACGGTTGAGGCACAGGCGCTGGAAGAGTGGCATTCTCTGCTGTAAATTCTGA
AA sequence
>Lus10026682 pacid=23164335 polypeptide=Lus10026682 locus=Lus10026682.g ID=Lus10026682.BGIv1.0 annot-version=v1.0
MFCLFIFHVAEGKQASPKSGNETFRQDIVKENNQKGLKVEEKGHDVVKDNNQKGLKVEEKDYVDRFLCQTNDQAGDYNDDLTDNSKVELGNIATREEHHE
MPEVTICYEEDEISHAVKDICVDEGVPVHDKFLFDTSTMDDYLSTFLPPGKVIKGQELDKEPVIVDDVIPENPPVSKISKDKGSEDAEKIHSVEIKEEKV
EPLEIRSVEIKEEEVDESSANLASNALKRSQSLGDLLALPEPSTDATCPEPFSSQTSGSIRRHGPDDNPDLSAATSTSHEELENDSKGPSSSMNSIASTS
KEPSNTAATTVHESDQEAERHSMDSMSDDLTNEVAGRLSFDNRVSNAAEIRLPDPDHVLKPQLLTSSIAGTDSNRIRYNIGDSSRFSVVAATEPVPYSGS
ISMRSDSSTTSARSFAFPVLQSEWNSSPVRMAKADRRRLRHRRWKSGILCCKF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G03810 18S pre-ribosomal assembly pro... Lus10026682
[exp]
0 1
AT4G26590 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPT... Lus10022541
[exp]
2.8 0.9067
AT4G30080 ARF ARF16 auxin response factor 16 (.1) Lus10023519
[exp]
3.5 0.8858
AT3G15840 PIFI post-illumination chlorophyll ... Lus10025847
[exp]
4.6 0.9120
AT2G03810 18S pre-ribosomal assembly pro... Lus10004632
[exp]
6.2 0.8467
AT3G18500 DNAse I-like superfamily prote... Lus10014775
[exp]
6.3 0.8863
AT5G12000 Protein kinase protein with ad... Lus10008466
[exp]
9.1 0.8434
AT1G32220 NAD(P)-binding Rossmann-fold s... Lus10012127
[exp]
10.4 0.8792
AT5G65380 MATE efflux family protein (.1... Lus10024945
[exp]
11.8 0.8789
AT3G01440 PnsL3, PQL2, PQ... PsbQ-like 2, Photosynthetic ND... Lus10035839
[exp]
16.7 0.8875
AT1G04760 ATVAMP726 vesicle-associated membrane pr... Lus10000754
[exp]
20.1 0.8534

Lus10026682 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.