Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69020 785 / 0 Prolyl oligopeptidase family protein (.1) AT5G66960 472 / 6e-156 Prolyl oligopeptidase family protein (.1) AT1G50380 345 / 3e-108 Prolyl oligopeptidase family protein (.1) AT1G76140 115 / 3e-26 Prolyl oligopeptidase family protein (.1.2) AT1G20380 107 / 7e-24 Prolyl oligopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004631 [exp] 1436 / 0 AT1G69020 830 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10032378 [exp] 513 / 5e-171 AT1G69020 372 / 1e-116 Prolyl oligopeptidase family protein (.1) Lus10017568 [exp] 490 / 4e-163 AT5G66960 1124 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10032920 [exp] 331 / 8e-103 AT1G50380 1018 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10015387 [exp] 322 / 3e-98 AT1G50380 1096 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10026659 [exp] 231 / 6e-72 AT1G69020 156 / 4e-45 Prolyl oligopeptidase family protein (.1) Lus10019994 [exp] 139 / 7e-34 AT1G76140 1008 / 0.0 Prolyl oligopeptidase family protein (.1.2) Lus10034556 [exp] 124 / 5e-29 AT1G76140 1056 / 0.0 Prolyl oligopeptidase family protein (.1.2) Lus10021235 [exp] 115 / 3e-26 AT1G76140 1184 / 0.0 Prolyl oligopeptidase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G137801 [exp] 959 / 0 AT1G69020 889 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.007G035900 [exp] 501 / 2e-167 AT5G66960 1087 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.007G001300 [exp] 347 / 2e-108 AT1G50380 1149 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.005G247300 [exp] 140 / 3e-34 AT1G76140 1206 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.005G247400 [exp] 139 / 7e-34 AT1G76140 1210 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.002G013900 [exp] 137 / 2e-33 AT1G76140 1165 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.002G014000 [exp] 132 / 1e-31 AT1G76140 1217 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.002G128700 [exp] 45 / 0.0001 AT5G36210 1049 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF02897 [flax] [poplar] Peptidase_S9_N Prolyl oligopeptidase, N-terminal beta-propeller domain CL0028 [flax] [poplar] AB_hydrolase PF00326 [flax] [poplar] Peptidase_S9 Prolyl oligopeptidase family
Representative CDS sequence Show only first row Show all	>Lus10026683 pacid=23164223 polypeptide=Lus10026683 locus=Lus10026683.g ID=Lus10026683.BGIv1.0 annot-version=v1.0 ATGGCGATCATCCGTTCCTTCATCTTAGCTTCTAGGGTTCAAACCTCCTGCTACCGCCGCCTTCTTAGCACCCAAATCCACCACACATTCCCATTCTCCT CCATCTGCCGGGAAAACCCACCGGCGGCGAAGAAAGTCCAAGCCGCCGTCACCGCACACGGCCAGACCTGGCAGGACCCGTATCAATGGATGCGGAACAC ATCCGACCCGGACTTCCTCGACTACATCCGCCGGGAGAACTCCTACGCCGTCGATTTCATGTCCGATACCAACCAGCTGCGGCGGACTCTCGTCCGGGAA ATGCGAAGTCGGCTTCCGGCGAAGGTGTCCACTCCCCCTGAACGTTGGGGAAACTGGCTGTATTACCAGTATGTACCAGAAGGGAAAGAGTATCCAGTTC TTTTCAGGAGGCTGGAAGAAGGGAGTGATGAATCTGGAATTGTGAAGAAGCTGTTCAGCTTTGTGAGTGGGGAGTTCAGAAAGGAGCAGATTGTGCTTGA TTGGAATGAAATTGCTGAACATATTGGCTATGTTCATGTGGGTACCTGCCGAGTTTCGCCATCCCATGATTTCATTGCGTATACAGTTGACATCAATGGA AGCGAGCAGTTCTTGCTTCGAATTAAGGATTTAAGCAACGGAACGATCGTTAATAGGCCAGAAATTGAAGGAGTTGTCAGCTTGGCCTGGGCTCAAGATG GGAGGACTTTGTTCTACACTGTATCCGATAAAAATCAGAGACCTTATAGGGTGATGTGTACAGAAGTAGGCTCAGATGGGATCAGTGACATTGCAGTTTA CACAGAGAAAGACTCAAGCTTTTGTGTGGACATAACAAGCACAAAAGATGGCAAGTTTATTACTGTTTACGTTATCGATGCAGCTCGCCCACTCGATGGC TTGGAGAGAATCTGTAGTCGAGTTTCAGATGTTCAGTATTTTGTGGAGCATCATCACGGTTCGTACTATATCCTTACCAATGCTCCTTTAACTGAGACTG GCAAGGAGATGTCTGATGGGAGTTACTACCTGGTTACATGCCGGAAAGAACATGTACATTCAACCGATTCACAGCAAATCATCCTTCCAAGTGAAGATGT GAGCTTCCATGATATGGATATTTTCGATCGACATTTTTTGCTATCTAAGCAATGCGATATTGAAGATCTCAATCCCTGGTATTTCCCTGTACCTACAAAC CTATGCAGCATTGCTCCCGGATCGAACCACGAGTTTTCGAGCTCAGTGTACCGTGTGATTCTTTCGTCTCCTGTGATGCCTGATGCTATTGTAGACTACG ATATATCAAAACGGGCGTTCTCCATCATACACCAAGATGAAACAGATGAGGTGGAAGGATGGAAAGACTTTTCCTCTGAGTACTGCTGCGAACGAAAGCA AGTTGTTTCCCATGATGGTGTTGAGATTACTCTAACGATCCTGTATTCTCAAAACACGTGGAGAAAAGGCGAGTCACCTGGACTATTGCACGGTTATGGA GCCTACGGCGAAACCCTGGATACGAGCTGGAGGTCAGACCGATTGAGCTTACTCGATCGTGGATGGGTGATTGCATTTGCTGATGTTAGGGGAGGTGGAG GAGGGAACGATTCATCGTGGCATAAATCAGGCATCAAACTAGCCAAACCAAACTCGATTCATGATTTCGTGTCATGTGCGAGCTTTCTTGTAGATGAAGG GTATGTGCACAGCAAGAAACTTGCTGCCCAAGGTACAAGTGCAGGAGGACTCCTTGTTGCAGCAGCAATCAATATGAAGACTGATATTTTTCATGCCACG ATCTTGAAGGTTCCGTTTCTGGATATCTGTAACTCACTGCTGGATCCGAGTTTGCCTCTAACCATACTCGACTACGAAGAGTTCGGGAACCCACAGATCG AGTCGGAGTTCGACTGCATCCGAAGCTACTCGCCTTATGATAACATCCAGCCTGGGAAATGCCAGCCAGCAATGCTCATAGCATCGTCATACAACGACTC GAGGGTTGGAGTGTGGGAAGCGGCCAAGTGGGTAGCCCGATTGAGAGACGTTACGTGCCCTAGCTGCTCGAGATCCATCGTGATGAAGATGAACATGAAC GGAGGCCATTTCGGGGAAGGTGGTGTCTACTCTGATTGTGAAGAGACTGCTTATGAATATGCTTTCCTCATGAAAGCTTTAGGTCCTCGTGAAGTGGACG ATTGA
AA sequence Show only first row Show all	>Lus10026683 pacid=23164223 polypeptide=Lus10026683 locus=Lus10026683.g ID=Lus10026683.BGIv1.0 annot-version=v1.0 MAIIRSFILASRVQTSCYRRLLSTQIHHTFPFSSICRENPPAAKKVQAAVTAHGQTWQDPYQWMRNTSDPDFLDYIRRENSYAVDFMSDTNQLRRTLVRE MRSRLPAKVSTPPERWGNWLYYQYVPEGKEYPVLFRRLEEGSDESGIVKKLFSFVSGEFRKEQIVLDWNEIAEHIGYVHVGTCRVSPSHDFIAYTVDING SEQFLLRIKDLSNGTIVNRPEIEGVVSLAWAQDGRTLFYTVSDKNQRPYRVMCTEVGSDGISDIAVYTEKDSSFCVDITSTKDGKFITVYVIDAARPLDG LERICSRVSDVQYFVEHHHGSYYILTNAPLTETGKEMSDGSYYLVTCRKEHVHSTDSQQIILPSEDVSFHDMDIFDRHFLLSKQCDIEDLNPWYFPVPTN LCSIAPGSNHEFSSSVYRVILSSPVMPDAIVDYDISKRAFSIIHQDETDEVEGWKDFSSEYCCERKQVVSHDGVEITLTILYSQNTWRKGESPGLLHGYG AYGETLDTSWRSDRLSLLDRGWVIAFADVRGGGGGNDSSWHKSGIKLAKPNSIHDFVSCASFLVDEGYVHSKKLAAQGTSAGGLLVAAAINMKTDIFHAT ILKVPFLDICNSLLDPSLPLTILDYEEFGNPQIESEFDCIRSYSPYDNIQPGKCQPAMLIASSYNDSRVGVWEAAKWVARLRDVTCPSCSRSIVMKMNMN GGHFGEGGVYSDCEETAYEYAFLMKALGPREVDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69020			Prolyl oligopeptidase family p...		Lus10026683 [exp]	0	1
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Lus10007449 [exp]	3.9	0.8621
AT5G04560		DME1, DME	DEMETER, HhH-GPD base excision...		Lus10027713 [exp]	12.0	0.8539
AT4G16570		ATPRMT7	ARABIDOPSIS THALIANA PROTEIN A...		Lus10004715 [exp]	12.8	0.8538
AT1G33410		NUP160, SAR1, A...	ARABIDOPSIS NUCLEOPORIN 160, S...		Lus10039130 [exp]	16.2	0.8612
AT1G17210		ATILP1	ARABIDOPSIS IAP-LIKE PROTEIN, ...		Lus10038518 [exp]	18.5	0.8249
AT4G38760			Protein of unknown function (D...		Lus10007578 [exp]	23.2	0.8597
AT2G02150		EMB2794	EMBRYO DEFECTIVE 2794, Tetratr...		Lus10034421 [exp]	27.0	0.8324
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10018933 [exp]	28.7	0.7815
AT5G03770		AtKdtA, KDTA	KDO transferase A (.1)		Lus10033622 [exp]	30.9	0.7734
AT3G13690			Protein kinase protein with ad...		Lus10006148 [exp]	30.9	0.7650

Compare expression of checked genes

Lus10026683 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.