Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69010 239 / 2e-77 bHLH bHLH102, BIM2 BES1-interacting Myc-like protein 2 (.1) AT5G08130 136 / 1e-36 bHLH BIM1, bHLH046 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT5G38860 131 / 8e-36 bHLH bHLH141, BIM3 BES1-interacting Myc-like protein 3 (.1) AT2G20180 59 / 1e-09 bHLH PIF1, PIL5, bHLH015 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) AT4G28815 58 / 2e-09 bHLH bHLH127 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G28790 58 / 2e-09 bHLH bHLH023 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G09530 58 / 3e-09 bHLH PIF3, POC1, PAP3 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) AT4G28800 57 / 8e-09 bHLH bHLH056 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G58010 56 / 1e-08 bHLH LRL3, bHLH082 LJRHL1-like 3 (.1) AT5G67110 54 / 2e-08 bHLH ALC, bHLH073 ALCATRAZ, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004630 [exp] 516 / 0 AT1G69010 257 / 2e-84 BES1-interacting Myc-like protein 2 (.1) Lus10007974 [exp] 153 / 6e-42 AT5G08130 330 / 1e-106 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10034358 [exp] 147 / 1e-41 AT1G69010 168 / 1e-49 BES1-interacting Myc-like protein 2 (.1) Lus10005091 [exp] 142 / 2e-38 AT1G69010 149 / 5e-41 BES1-interacting Myc-like protein 2 (.1) Lus10013502 [exp] 141 / 9e-38 AT5G08130 330 / 6e-107 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10022833 [exp] 62 / 2e-10 AT2G20180 310 / 5e-99 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Lus10011899 [exp] 61 / 5e-10 AT2G20180 290 / 6e-92 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Lus10042572 [exp] 56 / 3e-09 AT4G09820 156 / 1e-45 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10024811 [exp] 56 / 1e-08 AT4G36930 148 / 3e-41 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G112000 [exp] 299 / 1e-100 AT1G69010 292 / 4e-98 BES1-interacting Myc-like protein 2 (.1) Potri.010G137600 [exp] 296 / 7e-100 AT1G69010 325 / 4e-111 BES1-interacting Myc-like protein 2 (.1) Potri.015G048000 [exp] 189 / 4e-55 AT5G08130 359 / 3e-117 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.012G065000 [exp] 187 / 1e-54 AT5G08130 352 / 7e-115 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.004G112900 [exp] 168 / 1e-49 AT1G69010 186 / 1e-56 BES1-interacting Myc-like protein 2 (.1) Potri.017G101700 [exp] 161 / 6e-47 AT1G69010 184 / 5e-56 BES1-interacting Myc-like protein 2 (.1) Potri.002G252800 [exp] 61 / 5e-10 AT2G20180 222 / 7e-66 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Potri.013G001300 [exp] 60 / 7e-10 AT1G09530 224 / 6e-65 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) Potri.005G001800 [exp] 60 / 8e-10 AT1G09530 247 / 3e-73 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) Potri.005G207200 [exp] 57 / 5e-09 AT2G43010 171 / 1e-47 phytochrome interacting factor 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10026684 pacid=23164394 polypeptide=Lus10026684 locus=Lus10026684.g ID=Lus10026684.BGIv1.0 annot-version=v1.0 ATGAGAGGGAAAGGGAATCAGAATCATCATCAGGAGGAAGAAGAGTACGATGAGGAAGAATTGGTGGTTGGTTCCAGAAAAGATGGAGGAGCTCCTTCTT CCAATGTGTCTGCAACTACCAGCAACAGTGCTAATAACACCAATAGCCACAGAGATGGGAAGAACAGTGACAAGGCTAGTGCTGTGAGATCGAAGCATTC TGTGACTGAGCAGCGGAGGAGGAGCAAGATCAACGAAAGGTTTCAAATATTGAGAGAACTAATCCCTCAATGCGACCAGAAGAGGGATACAGCATCCTTT CTATTCGAGGTGATTGAATACGTCCGTTATTTACAAGAAAAAGTGCAGAAGTATGAGGGTCCGTATCAGGGTTGGCCTGCGGATCCAACAAAGTTGATGC CATGGAGGAATAGTCACTGGCAAGTTCAGAATTTGGTTGGTCATCCACAAGCAATGAGCAATGGTTCCGGTATGGCGCCGGTGTTTCCTGCAAAGCTCGA CGAGAATGGCATTTCTGTTACTACCTCTTCCATGATGGAGCCTGATTCTTTAAGGGATGCAGCTATGATGCAACAAGCGGACTTACTGAATAAGGACGGT TATCCTGATCTTCTCAGGCACTTTCAGACAGCAGCCTTGCCTGCTGTTCGCAGTGATGGCGTCGATATGCATCATCCTCTTCAGCAACCGTTGTCCGATC CACAATCAGCCGAGTGTCCCATGACTGCGGAGGAACTAGCCACTGAAGGAGGGACGATTAACATTTCAAGTGCATACTCCGAAGGGTTACTGAATGCTCT GACGCAAGCGCTACAGACTGCAGGAGTCGATCTTTCACAAGCAAACATTTCACTGCAAATCGATCTTGGGAAACGAGCTAAGGATAATCAGAACACACTT CCTAGCAATCAAACGCCAATTCATCCAATTGATGGAACTGACCATGTCGATAAGCGCATGAAGATGTAG
AA sequence Show only first row Show all	>Lus10026684 pacid=23164394 polypeptide=Lus10026684 locus=Lus10026684.g ID=Lus10026684.BGIv1.0 annot-version=v1.0 MRGKGNQNHHQEEEEYDEEELVVGSRKDGGAPSSNVSATTSNSANNTNSHRDGKNSDKASAVRSKHSVTEQRRRSKINERFQILRELIPQCDQKRDTASF LFEVIEYVRYLQEKVQKYEGPYQGWPADPTKLMPWRNSHWQVQNLVGHPQAMSNGSGMAPVFPAKLDENGISVTTSSMMEPDSLRDAAMMQQADLLNKDG YPDLLRHFQTAALPAVRSDGVDMHHPLQQPLSDPQSAECPMTAEELATEGGTINISSAYSEGLLNALTQALQTAGVDLSQANISLQIDLGKRAKDNQNTL PSNQTPIHPIDGTDHVDKRMKM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Lus10026684 [exp]	0	1
AT3G23050	AUX_IAA	AXR2, IAA7	AUXIN RESISTANT 2, indole-3-ac...		Lus10002724 [exp]	7.2	0.8203
AT1G33811			GDSL-like Lipase/Acylhydrolase...		Lus10000893 [exp]	28.4	0.7797
AT2G20760			Clathrin light chain protein (...		Lus10039815 [exp]	29.0	0.7946
AT2G36710			Pectin lyase-like superfamily ...		Lus10027737 [exp]	37.1	0.7638
AT4G02630			Protein kinase superfamily pro...		Lus10012664 [exp]	42.0	0.7857
AT3G16240		DELTA-TIP1, ATT...	delta tonoplast integral prote...		Lus10025808 [exp]	66.7	0.7814
AT5G14680			Adenine nucleotide alpha hydro...		Lus10008772 [exp]	89.7	0.6971
					Lus10021343 [exp]	100.8	0.7028
AT3G07470			Protein of unknown function, D...		Lus10029538 [exp]	118.4	0.7559
					Lus10025831 [exp]	160.4	0.7202

Compare expression of checked genes

Lus10026684 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.