Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15740 229 / 1e-71 RRT1 O-fucosyltransferase family protein (.1) AT3G02250 224 / 7e-70 O-fucosyltransferase family protein (.1) AT1G14020 197 / 2e-59 O-fucosyltransferase family protein (.1) AT2G03280 191 / 3e-57 O-fucosyltransferase family protein (.1.2) AT5G64600 149 / 4e-41 O-fucosyltransferase family protein (.1) AT2G37980 147 / 3e-40 O-fucosyltransferase family protein (.1) AT1G22460 146 / 5e-40 O-fucosyltransferase family protein (.1) AT3G54100 138 / 1e-36 O-fucosyltransferase family protein (.1) AT5G01100 137 / 1e-36 O-fucosyltransferase family protein (.1) AT1G76270 134 / 1e-35 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004629 [exp] 417 / 2e-145 AT5G15740 498 / 8e-174 O-fucosyltransferase family protein (.1) Lus10013503 [exp] 226 / 1e-70 AT5G15740 765 / 0.0 O-fucosyltransferase family protein (.1) Lus10007975 [exp] 225 / 6e-70 AT5G15740 772 / 0.0 O-fucosyltransferase family protein (.1) Lus10036832 [exp] 221 / 1e-68 AT5G15740 591 / 0.0 O-fucosyltransferase family protein (.1) Lus10019195 [exp] 220 / 6e-68 AT5G15740 587 / 0.0 O-fucosyltransferase family protein (.1) Lus10021717 [exp] 218 / 2e-67 AT5G15740 752 / 0.0 O-fucosyltransferase family protein (.1) Lus10034651 [exp] 218 / 2e-67 AT5G15740 754 / 0.0 O-fucosyltransferase family protein (.1) Lus10036833 [exp] 210 / 6e-64 AT3G02250 539 / 0.0 O-fucosyltransferase family protein (.1) Lus10019196 [exp] 209 / 8e-64 AT5G15740 541 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G113500 [exp] 234 / 7e-74 AT5G15740 801 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G101300 [exp] 232 / 8e-73 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1) Potri.012G064200 [exp] 218 / 2e-67 AT5G15740 733 / 0.0 O-fucosyltransferase family protein (.1) Potri.015G048100 [exp] 211 / 5e-65 AT5G15740 716 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G090600 [exp] 210 / 2e-64 AT1G14020 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G164700 [exp] 201 / 8e-61 AT1G14020 781 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G161800 [exp] 168 / 3e-48 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G100400 [exp] 157 / 3e-44 AT1G22460 663 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G059600 [exp] 155 / 2e-43 AT5G64600 673 / 0.0 O-fucosyltransferase family protein (.1) Potri.016G109700 [exp] 148 / 4e-40 AT2G37980 741 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10026685 pacid=23164236 polypeptide=Lus10026685 locus=Lus10026685.g ID=Lus10026685.BGIv1.0 annot-version=v1.0 ATGGCTGAGAAGGCAAAGGTTGAGGAGGATGAACTATCCGAAGCTGCTGCAGATACTCAATCTCGACCGAATTTAGAGGCCAAGTTCTGCATTCTGATGG CAGCAATCATGGTGGTTTTATTCGTCCGTACAATGGAGTTAGCAACCTTGAAGGAAAGATTCGTTTCGCCAATGCCATGGCGTACGGCTGCATACTTGGT TTGTCTCATGAATCGAAGGTACAGTAAACTGAAAAAACTGTCTCATGATCAGATTGTGGAGGTCATGAATCTAAGGAAATCTTATCCACAGGGGAAGAGC ATAGCTGATCCGAGGAAGAAAAGGCGAGCCGGGTTGTGCCCTTTAACACCGGAAGAGATCGCATTGGCATTACAGGCACTGGGGATCGACCGAAACATTC AGATATACATTGCTTCTAGAAAAATTTACAAGGGAGAATCCATGATGGGAAACCTGAACGAAGCTTTCCCGAATCTGATCAGAAAGGAGACGCTACTTGA TCGGTCGAGTCTCGAACCGTTTCGAAGCCACGCCAATGCAATGGCAGCTATGGACTACATTGTTGCAGTGGAGAGTGATATCATTGTCCCTACATTTGAT GGGAACATGGCGTTTGCTGTTGATGGTCATCGAAGGTATCTAGGGTTCAGGAAAACCATCAAGATAAACAGGAAGCTGCTGCTAAGCTTGTTTGATCAGT ACAAGATCGGAAAGCGTAGCTGGAGCGAGTTCTGCTTCGTAATGAAGGCGGCACATGCCGGAAATCGTATGGCAAGTCCTGCAGAAAGATTGCAGATCCC GGACAAACTGCTCAAGGAGGACAGTTTCTACTCAAACCCGCAAGAATGCCTCCCACACTCAGCATCATCGCCCTGA
AA sequence Show only first row Show all	>Lus10026685 pacid=23164236 polypeptide=Lus10026685 locus=Lus10026685.g ID=Lus10026685.BGIv1.0 annot-version=v1.0 MAEKAKVEEDELSEAAADTQSRPNLEAKFCILMAAIMVVLFVRTMELATLKERFVSPMPWRTAAYLVCLMNRRYSKLKKLSHDQIVEVMNLRKSYPQGKS IADPRKKRRAGLCPLTPEEIALALQALGIDRNIQIYIASRKIYKGESMMGNLNEAFPNLIRKETLLDRSSLEPFRSHANAMAAMDYIVAVESDIIVPTFD GNMAFAVDGHRRYLGFRKTIKINRKLLLSLFDQYKIGKRSWSEFCFVMKAAHAGNRMASPAERLQIPDKLLKEDSFYSNPQECLPHSASSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10026685 [exp]	0	1
AT1G17930			Aminotransferase-like, plant m...		Lus10023395 [exp]	2.4	0.7189
					Lus10006458 [exp]	7.7	0.7227
AT2G21540		ATSFH3	SEC14-like 3 (.1.2.3)		Lus10042303 [exp]	9.9	0.7670
AT1G16750			Protein of unknown function, D...		Lus10039917 [exp]	17.0	0.7387
AT5G09500			Ribosomal protein S19 family p...		Lus10007469 [exp]	23.0	0.6793
					Lus10017966 [exp]	24.9	0.7349
AT3G27970			Exonuclease family protein (.1...		Lus10022230 [exp]	31.1	0.6865
AT5G47840		AMK2	adenosine monophosphate kinase...		Lus10009477 [exp]	38.7	0.7081
AT5G43080		CYCA3;1	Cyclin A3;1 (.1)		Lus10026598 [exp]	59.9	0.6435
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10043009 [exp]	61.6	0.6636

Compare expression of checked genes

Lus10026685 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.