Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42830 125 / 7e-35 HXXXD-type acyl-transferase family protein (.1) AT5G07850 101 / 9e-26 HXXXD-type acyl-transferase family protein (.1) AT5G07860 93 / 6e-23 HXXXD-type acyl-transferase family protein (.1) AT5G07870 93 / 9e-23 HXXXD-type acyl-transferase family protein (.1) AT5G01210 80 / 3e-18 HXXXD-type acyl-transferase family protein (.1) AT2G39980 76 / 7e-17 HXXXD-type acyl-transferase family protein (.1) AT5G67150 70 / 1e-14 HXXXD-type acyl-transferase family protein (.1) AT5G23940 62 / 8e-12 PEL3, DCR, EMB3009 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) AT3G50300 60 / 3e-11 HXXXD-type acyl-transferase family protein (.1) AT5G38130 59 / 1e-10 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024809 [exp] 145 / 4e-42 AT5G42830 442 / 8e-153 HXXXD-type acyl-transferase family protein (.1) Lus10035519 [exp] 80 / 3e-18 AT5G01210 520 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10040222 [exp] 67 / 2e-13 AT2G39980 633 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10028267 [exp] 66 / 3e-13 AT2G39980 631 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10039255 [exp] 63 / 4e-13 AT5G23940 206 / 3e-65 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Lus10031148 [exp] 65 / 6e-13 AT5G67150 284 / 5e-91 HXXXD-type acyl-transferase family protein (.1) Lus10027500 [exp] 61 / 3e-11 AT5G23940 571 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Lus10031149 [exp] 59 / 1e-10 AT3G50280 305 / 3e-99 HXXXD-type acyl-transferase family protein (.1) Lus10039256 [exp] 56 / 1e-09 AT5G23940 576 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G025550 [exp] 127 / 3e-35 AT5G42830 579 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025600 [exp] 125 / 2e-34 AT5G42830 565 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025500 [exp] 123 / 7e-34 AT5G42830 576 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.006G097500 [exp] 82 / 7e-19 AT5G01210 633 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.008G065000 [exp] 78 / 2e-17 AT2G39980 705 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.016G112400 [exp] 75 / 2e-16 AT5G01210 614 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.010G192400 [exp] 72 / 2e-15 AT2G39980 708 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.003G057100 [exp] 63 / 3e-12 AT3G50280 303 / 4e-99 HXXXD-type acyl-transferase family protein (.1) Potri.003G057001 [exp] 62 / 8e-12 AT5G67150 275 / 3e-88 HXXXD-type acyl-transferase family protein (.1) Potri.003G057200 [exp] 59 / 6e-11 AT5G67150 297 / 1e-96 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10026686 pacid=23164361 polypeptide=Lus10026686 locus=Lus10026686.g ID=Lus10026686.BGIv1.0 annot-version=v1.0 ATGACGGTGAAGCAAATATCAGATTGGTTCGTGAGGCCTGAGCGTTGGACGGATGGAATGAAACGTCTTTTGAATTTGCCACCGTGGGATCCGCTCATGA TCTCCGTTCATTACATCCAAAAGGGACTCGAGTATTTCGGAAACTCAATTAGTCCGATGAGGACTTCCGTTACTGCCGGGGAGCTGCTCGAGGATGACCT CGGATGGGAGGCATTGAGGTTACATCTGGCTGTGGCTGGACACGGATATGAGAAACTCTGGGGAGGGTTAAGGTTGTGGTTGGAGTCGCCGGTGGTTTAC AGGATGGAGCAGCTGTTCGATCACAGTGTCATGATAGGGAGCTGGCCTAGGTTCAACAAGTACGGGATTGAGTTCGGATTGGGGAAAGCATTGGCTCTTA GGAGTGGTTATGCTGACAAATTCAGTGGGACAGTTTTGGCCTAA
AA sequence Show only first row Show all	>Lus10026686 pacid=23164361 polypeptide=Lus10026686 locus=Lus10026686.g ID=Lus10026686.BGIv1.0 annot-version=v1.0 MTVKQISDWFVRPERWTDGMKRLLNLPPWDPLMISVHYIQKGLEYFGNSISPMRTSVTAGELLEDDLGWEALRLHLAVAGHGYEKLWGGLRLWLESPVVY RMEQLFDHSVMIGSWPRFNKYGIEFGLGKALALRSGYADKFSGTVLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42830			HXXXD-type acyl-transferase fa...		Lus10026686 [exp]	0	1
AT4G05130		ATENT4	equilibrative nucleoside trans...		Lus10002590 [exp]	8.8	0.6380
AT5G62440			Protein of unknown function (D...		Lus10024824 [exp]	10.0	0.5381
AT5G54010			UDP-Glycosyltransferase superf...		Lus10008453 [exp]	26.8	0.5880
AT5G55150			Protein of unknown function (D...		Lus10008665 [exp]	27.2	0.4515
AT5G07480		KUOX1	KAR-UP oxidoreductase 1 (.1)		Lus10043000 [exp]	31.3	0.5787
AT4G35610	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10035994 [exp]	35.0	0.5749
AT4G10850		SWEET7, AtSWEET...	Nodulin MtN3 family protein (....		Lus10023047 [exp]	38.2	0.5733
AT5G12060			Plant self-incompatibility pro...		Lus10023195 [exp]	40.8	0.5733
AT5G17600			RING/U-box superfamily protein...		Lus10008458 [exp]	43.3	0.5733
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10030505 [exp]	45.5	0.5707

Compare expression of checked genes

Lus10026686 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.