Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19640 347 / 1e-117 SDG39, ASHR2 SET DOMAIN PROTEIN 39, ASH1-related 2, ASH1-related protein 2 (.1.2) AT1G26760 54 / 1e-07 SDG35, ATXR1 SET domain protein 35 (.1) AT5G06620 52 / 3e-07 SDG38, ATXR4 SET domain protein 38 (.1) AT3G21820 50 / 2e-06 SDG36, ATXR2 SET DOMAIN PROTEIN 36, histone-lysine N-methyltransferase ATXR2 (.1) AT2G17900 48 / 8e-06 ASHR1, SDG37 ASH1-related 1, SET domain group 37 (.1) AT1G43245 42 / 0.0008 SET domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004628 [exp] 591 / 0 AT2G19640 399 / 4e-138 SET DOMAIN PROTEIN 39, ASH1-related 2, ASH1-related protein 2 (.1.2) Lus10029712 [exp] 58 / 6e-09 AT2G17900 615 / 0.0 ASH1-related 1, SET domain group 37 (.1) Lus10031573 [exp] 55 / 6e-08 AT3G21820 603 / 0.0 SET DOMAIN PROTEIN 36, histone-lysine N-methyltransferase ATXR2 (.1) Lus10015102 [exp] 53 / 2e-07 AT3G21820 613 / 0.0 SET DOMAIN PROTEIN 36, histone-lysine N-methyltransferase ATXR2 (.1) Lus10013535 [exp] 49 / 5e-06 AT5G06620 367 / 2e-127 SET domain protein 38 (.1) Lus10037155 [exp] 48 / 1e-05 AT1G26760 573 / 0.0 SET domain protein 35 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G071700 [exp] 414 / 6e-144 AT2G19640 416 / 2e-144 SET DOMAIN PROTEIN 39, ASH1-related 2, ASH1-related protein 2 (.1.2) Potri.005G173100 [exp] 59 / 4e-09 AT2G17900 657 / 0.0 ASH1-related 1, SET domain group 37 (.1) Potri.006G196566 [exp] 50 / 3e-07 AT5G06620 229 / 2e-75 SET domain protein 38 (.1) Potri.008G089500 [exp] 50 / 2e-06 AT1G26760 646 / 0.0 SET domain protein 35 (.1) Potri.017G038700 [exp] 49 / 6e-06 AT3G21820 645 / 0.0 SET DOMAIN PROTEIN 36, histone-lysine N-methyltransferase ATXR2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [flax] [poplar] SET SET domain
Representative CDS sequence Show only first row Show all	>Lus10026687 pacid=23164383 polypeptide=Lus10026687 locus=Lus10026687.g ID=Lus10026687.BGIv1.0 annot-version=v1.0 ATGTTGAAGGTTGAAGAAATACAAGGGAAAGGAAGAGGCTTGGTATCAACTCAGCCACTAAAGGGTGGCCAAATAGTGCTCAGAGATTCTCCCATCCTGC TCTATTCTGCTAAGCCTTTGAATCCAAAGCAGCATCATTCTTCCTCATCCAGCTCGATTCTTTACTGTGACAAATGCTTTAGAAAGATACAGTCACCTTC AGCTGCATTACCATGCCCTTCTTGCTCTCACCATCATCGTTTCTGCAGCTCTAACTGCCTCTCCTCCCACTCTCAATGGGTGTGCCAGTCTCTATCTCGA CTCAGCGAATGCTCCGCTTTGGTCCTCAATCAACCGCTGGATCGCCAAGTACAAGCTCGGTATCTCATTGCTGCGTACAATCTGGGAATTGTGAACCCTC CCCAGTTCCAAGCTCTGCAGTCTCTTCAATCCGCCACTCAAAGCCATGATGACATGGCATCAGCTGCCTATTTCCTGCATTCGTTAATCTCGTCTATTTG TCCACCTCCTCCATTAGAAGGGTTTGTCTTTTCGTTGGAGCTGACCTTGTCTCTCCTGGTGAGGGACAAGCTTAACGCCTTTGGTTTGATGGAACCGTTG AACAATGGTGGTGAGAGATCGGTCAGGGCTTATGGTATCTACCCGAGGGCTTCAATGTTCAACCATGATTGCCTCCCGAATGCTTGCAGGTTCGATTATG TTGACTCAGACATGAGGTCTGATACAAATACCGACATCATTGTTCGGATGATTCACGATGTGCCTCAGGGTAGAGAGATCTGTTTAAGTTACTTCCCGGT CAATGAGAACTATTCATCGAGGCAAAAAAGGTTGCTGGGGGATTACGGGTTCTCCTGTGACTGTGATCGCTGCAAAGTCGAAGAAAATTGGTCTGATGAG GAGGATGAGTGTGAGATGGACCAGTCAATGGAGGAGGAGGAGGAGAACGATGAAGAAGACGAATCAATGGATGCAGATGAAGAAGGTAACGAAGCCGGTC AGGACTTCCCTCACGCTTATTTCTTCGTGCGATACATGTGTAATGTCCAGAATTGTTGGGGTACGCTAGCTCCTTTGCCTCCAACATCAGATGCTGGCAA TTCGTCGAATGTCATGGAGTGTAATGTATGCGGTAATCGTAAACCTGATGAGTTTCTTGCAGCTTGA
AA sequence Show only first row Show all	>Lus10026687 pacid=23164383 polypeptide=Lus10026687 locus=Lus10026687.g ID=Lus10026687.BGIv1.0 annot-version=v1.0 MLKVEEIQGKGRGLVSTQPLKGGQIVLRDSPILLYSAKPLNPKQHHSSSSSSILYCDKCFRKIQSPSAALPCPSCSHHHRFCSSNCLSSHSQWVCQSLSR LSECSALVLNQPLDRQVQARYLIAAYNLGIVNPPQFQALQSLQSATQSHDDMASAAYFLHSLISSICPPPPLEGFVFSLELTLSLLVRDKLNAFGLMEPL NNGGERSVRAYGIYPRASMFNHDCLPNACRFDYVDSDMRSDTNTDIIVRMIHDVPQGREICLSYFPVNENYSSRQKRLLGDYGFSCDCDRCKVEENWSDE EDECEMDQSMEEEEENDEEDESMDADEEGNEAGQDFPHAYFFVRYMCNVQNCWGTLAPLPPTSDAGNSSNVMECNVCGNRKPDEFLAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19640		SDG39, ASHR2	SET DOMAIN PROTEIN 39, ASH1-re...		Lus10026687 [exp]	0	1
AT1G13030			sphere organelles protein-rela...		Lus10036876 [exp]	3.5	0.9060
AT1G80530			Major facilitator superfamily ...		Lus10001678 [exp]	5.9	0.8856
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10040316 [exp]	6.9	0.8868
AT3G53740			Ribosomal protein L36e family ...		Lus10025342 [exp]	7.5	0.8981
AT5G58420			Ribosomal protein S4 (RPS4A) f...		Lus10004272 [exp]	8.5	0.9015
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Lus10043478 [exp]	10.7	0.8995
AT3G16840			P-loop containing nucleoside t...		Lus10004404 [exp]	11.2	0.8190
AT1G49540		ELP2, AtELP2	Elongator subunit 2, elongator...		Lus10007953 [exp]	12.2	0.8561
AT1G64600			methyltransferases;copper ion ...		Lus10003205 [exp]	12.6	0.8668
AT1G30460	C3HZnF	CPSF30, ATCPSF3...	ARABIDOPSIS THALIANA CLEAVAGE ...		Lus10008853 [exp]	13.4	0.8659

Compare expression of checked genes

Lus10026687 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.