Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60780 814 / 0 HAP13 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) AT1G10730 774 / 0 Clathrin adaptor complexes medium subunit family protein (.1) AT5G46630 364 / 8e-123 Clathrin adaptor complexes medium subunit family protein (.1.2) AT4G24550 258 / 2e-81 Clathrin adaptor complexes medium subunit family protein (.1.2.3) AT1G56590 157 / 1e-43 ZIP4 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1) AT4G35410 41 / 0.0004 Clathrin adaptor complex small chain family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004626 [exp] 874 / 0 AT1G60780 827 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10042083 [exp] 767 / 0 AT1G60780 779 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10018088 [exp] 632 / 0 AT1G60780 632 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10000107 [exp] 556 / 0 AT1G60780 572 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10040086 [exp] 347 / 3e-116 AT5G46630 853 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Lus10030961 [exp] 331 / 7e-110 AT5G46630 837 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Lus10024548 [exp] 246 / 2e-76 AT4G24550 804 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10003537 [exp] 234 / 1e-71 AT4G24550 785 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10031432 [exp] 168 / 3e-47 AT1G56590 705 / 0.0 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G044700 [exp] 841 / 0 AT1G60780 834 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Potri.008G187600 [exp] 840 / 0 AT1G60780 831 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Potri.003G090800 [exp] 355 / 3e-119 AT5G46630 831 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Potri.001G143800 [exp] 352 / 6e-118 AT5G46630 816 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Potri.002G105100 [exp] 249 / 4e-78 AT4G24550 817 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2.3) Potri.005G010600 [exp] 162 / 2e-45 AT1G56590 716 / 0.0 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1) Potri.013G006400 [exp] 159 / 3e-44 AT1G56590 712 / 0.0 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1) Potri.002G105050 [exp] 81 / 6e-18 AT4G24550 299 / 9e-102 Clathrin adaptor complexes medium subunit family protein (.1.2.3) Potri.012G052000 [exp] 44 / 5e-05 AT2G17380 307 / 6e-109 associated protein 19 (.1) Potri.014G079000 [exp] 42 / 0.0003 AT4G35410 291 / 1e-102 Clathrin adaptor complex small chain family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0431 [flax] [poplar] PF PF01217 [flax] [poplar] Clat_adaptor_s Clathrin adaptor complex small chain CL0448 [flax] [poplar] Cargo_bd_muHD PF00928 [flax] [poplar] Adap_comp_sub Adaptor complexes medium subunit family
Representative CDS sequence Show only first row Show all	>Lus10026688 pacid=23164301 polypeptide=Lus10026688 locus=Lus10026688.g ID=Lus10026688.BGIv1.0 annot-version=v1.0 ATGGCGGCAGTTTCCGCTCTCTTCCTCCTCGACATTAAGGGCCGCGTTCTGGTTTGGCGCGATTACCGTGGCGACGTCACCGCTCTCCAGGCTGAGAAAT TCTTCACCAAGCTCATCGAGAAAGAGGGAGATCCACAGTCGCAAAATCCTGTAGTGTACGATAATGGAGTCAGTTACATGTTCATACAGCATAGCAATGT TTACCTCATGACTGCTGCGCGGCAGAACTGCAATGCGGCCAGCCTTCTCTCGTTTCTGCACCGTGTAGTTGATGTATTTAAGCATTACTTTGAAGAACTG GAAGAGGAATCACTGAGAGACAACTTTGTTGTAGTGTATGAGTTGCTAGATGAAATGATGGACTTTGGGTACCCTCAGTACACCGAAGCGAAAATTCTGA GTGAGTTTATCAAGACGGATGCTTACAGAATGGAAACTACGCAGAGGCCTCCAATGGCTGTGACAAATGCGGTGTCTTGGCGCAGTGAAGGGATATCATA TAAGAAAAATGAAGTTTTCTTGGATGTGGTGGAGAGTGTTAATATACTTGTTAATAGCAACGGGCAAGTGATTAGATCAGATGTCGTTGGAGCATTGAAG ATGAGAACTTATTTGAGTGGTATGCCTGAGTGTAAGCTTGGCCTAAATGATAGAGTATTATTGGAAGCTCAAGGTCGAGCAACTAAGGGGAAAGCTATTG ACTTGGAAGACATCAAATTTCATCAACTGATATGTCAAGCTGAATGCCTTCTTTTCACAAGGTGTGTGCGTTTGGCTCGATTCGAGAACGATAGGACTAT TTCCTTCATACCTCCTGATGGGTCTTTTGATCTGATGACTTACCGACTTAGCACTCAGGTCAAGCCGTTGGTTTGGGTGGAAGCTCAAGTCGAAAGGCAT TCAAGAAGTAGGGTTGAGATCATGGTAAAGGCTAGAAGTCAGTTCAAGGAACGAAGCACAGCAACAAATGTGGAGATCGAGTTGCCTGTTCCTGCCGATG CTTCCAATCCCAACATCAGAACATCGATGGGATCAGCATCGTATGCCCCTGAACACGATGCTTTGATGTGGAAAATCAAATCTTTCCCCGGTGGAAAGGA GTACATGTTAAGGGCAGAGTTCAATCTCTCCAGTATAACAGCTGAAGAAGCAGTTCCAGAGAGAAAGGCTCCTATTCGCGTCAAATTCGAGATTCCATAT TTCACCGTTTCAGGAATTCAGGTCCGGTACCTAAAGGTGATCGAGAAAAGCGGTTACCAAGCCCTTCCATGGGTGCGATACATTACAATGGCCGGTGAGT ACGAACTTCGACTAATCTGA
AA sequence Show only first row Show all	>Lus10026688 pacid=23164301 polypeptide=Lus10026688 locus=Lus10026688.g ID=Lus10026688.BGIv1.0 annot-version=v1.0 MAAVSALFLLDIKGRVLVWRDYRGDVTALQAEKFFTKLIEKEGDPQSQNPVVYDNGVSYMFIQHSNVYLMTAARQNCNAASLLSFLHRVVDVFKHYFEEL EEESLRDNFVVVYELLDEMMDFGYPQYTEAKILSEFIKTDAYRMETTQRPPMAVTNAVSWRSEGISYKKNEVFLDVVESVNILVNSNGQVIRSDVVGALK MRTYLSGMPECKLGLNDRVLLEAQGRATKGKAIDLEDIKFHQLICQAECLLFTRCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLVWVEAQVERH SRSRVEIMVKARSQFKERSTATNVEIELPVPADASNPNIRTSMGSASYAPEHDALMWKIKSFPGGKEYMLRAEFNLSSITAEEAVPERKAPIRVKFEIPY FTVSGIQVRYLKVIEKSGYQALPWVRYITMAGEYELRLI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Lus10026688 [exp]	0	1
AT2G38020		EMB258, MAN, VC...	VACUOLELESS 1, MANGLED, vacuol...		Lus10012203 [exp]	1.4	0.8580
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10034820 [exp]	1.7	0.8667
AT4G30240			Syntaxin/t-SNARE family protei...		Lus10017038 [exp]	1.7	0.8428
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10017652 [exp]	3.2	0.8103
AT3G55830		EPC1	ECTOPICALLY PARTING CELLS, Nuc...		Lus10040216 [exp]	3.3	0.8065
AT4G24550			Clathrin adaptor complexes med...		Lus10024548 [exp]	4.0	0.8298
AT3G16090		AtHrd1A	homolog of yeast Hrd1, RING/U-...		Lus10023477 [exp]	4.2	0.8254
AT3G42050			vacuolar ATP synthase subunit ...		Lus10020335 [exp]	6.2	0.7902
AT2G16880			Pentatricopeptide repeat (PPR)...		Lus10041421 [exp]	6.5	0.8239
AT3G46440		UXS5	UDP-XYL synthase 5 (.1.2)		Lus10005450 [exp]	6.9	0.8190

Compare expression of checked genes

Lus10026688 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.