Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51940 347 / 1e-110 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT3G21630 275 / 8e-84 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT3G20530 215 / 9e-64 Protein kinase superfamily protein (.1) AT5G38560 218 / 5e-62 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT1G61860 210 / 1e-61 Protein kinase superfamily protein (.1) AT5G18610 213 / 2e-61 Protein kinase superfamily protein (.1.2) AT4G02010 217 / 3e-61 Protein kinase superfamily protein (.1) AT3G24790 208 / 3e-61 Protein kinase superfamily protein (.1) AT1G10620 214 / 2e-60 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT3G23750 216 / 4e-60 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004625 [exp] 1116 / 0 AT1G51940 347 / 7e-111 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10027677 [exp] 479 / 3e-162 AT1G51940 320 / 7e-101 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10037586 [exp] 334 / 2e-105 AT1G51940 807 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10006841 [exp] 333 / 3e-105 AT1G51940 812 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10030022 [exp] 283 / 3e-87 AT3G21630 692 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10035301 [exp] 275 / 6e-84 AT3G21630 578 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10035302 [exp] 283 / 3e-83 AT3G21630 706 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10040050 [exp] 214 / 4e-63 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Lus10011148 [exp] 212 / 2e-62 AT3G20530 560 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G187500 [exp] 631 / 0 AT1G51940 362 / 7e-117 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.015G081601 [exp] 594 / 0 AT1G51940 337 / 5e-107 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.T125208 [exp] 591 / 0 AT1G51940 336 / 9e-107 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.001G190200 [exp] 340 / 4e-108 AT1G51940 824 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.006G252600 [exp] 330 / 5e-105 AT1G51940 326 / 4e-103 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.014G156400 [exp] 279 / 2e-85 AT3G21630 678 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.011G010000 [exp] 278 / 1e-84 AT3G21630 673 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.002G226600 [exp] 277 / 1e-84 AT3G21630 697 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.001G421400 [exp] 215 / 1e-63 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1) Potri.013G025700 [exp] 215 / 4e-63 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0187 [flax] [poplar] LysM PF01476 [flax] [poplar] LysM LysM domain
Representative CDS sequence Show only first row Show all	>Lus10026689 pacid=23164416 polypeptide=Lus10026689 locus=Lus10026689.g ID=Lus10026689.BGIv1.0 annot-version=v1.0 ATGGCGTCTCTGAGAACAAAATTCCTCATCATCATAATCCCAAACTTCCTCTTCCTCACCATCACCAGCCAAAAATCAACACCATCCCCAACAACACCAT TACCACCGATCATGTTCCCCTTCCCATGCTCCCAATCCCTCCCAACCTGCAAAGCCTCCCTATACCACTCCTTCTCCGGCCATACCCCACAACAGCTCTC ATCTTTCTACTCCGTCCCCACCTCCGACATCCAACCGGTCCCTCGACATCGCCGCCAAGACTACCTCATTACCGTTCCTTGCTCTTGCCAAACGATAACC ACCACCAAAGCCTACTTCTACCCCGTCAGCTATACTGTCCAGCAAAGGGACACGTTCTCCAACGTCTCGAAGGACATCTACAGCGGCCAGCTCTGGGACG AGGGGAACGAAGAGCAGAAGTTCGTCGCTGGAAATAACGTGACGTTGAATTTGTTATGTGGGTGTGAGGAAGAAGGAGATGGCAACGGGGATCAGATTGT GACGTATACTGTTCAGAATGGTGATACTTTGTCTGATATTGGTCAGAGGTTTCATGCTAGCTTGCCCAGCATGGTGAGCTTGAATCAGCTGCTGGAGAAT AACACTGTGTTTATTGATATCGGTTGGGTTCTTTATGTCCCTCGTGGCTCTAAAGGAGTTGGTGGGGTTGGGGGTGGTGCTGATCAGCCGTCCTCTGAAT CAAGCGCCAAGAAGTTGACGGCGTTGATCATAGTCCTGCCGTTGATCACGGCGTTCCTTCTGGCAATCGCAACGTTAATCTTCCTCTATCGGAGGAAGAG ACAGAACCAGAAAATGCCGCCGGCGGACAAACAGAAGGGTGCTGCTGCAAAGTTCAGGAGCATCAGCACTTTCAGGACAGCTGGCTCTTCAATCCCCAAG TCGTTCAAGGAATTCACAGAAGATTTTGAGAAAGGGATGATTGACCCGGAAGGACCGGTGCTGTACAGCATAGAGGAGATTCAAGAAGCCACCAATGACT TCGATGAGTCCAAGAACATTGGCGAGGGTGGATATGGTCTCGTGTTCTTTGGCGTCTTGCGTGGCAAGGAGGTGGCTATTAAGGTGATGAGATCCAATAA GTCGAAGGAGTTTTACGCGGAGGTCAACGTTTTGTGTAAGATTCATCATATCAACGTTGTGGAGCTATTGGGATATGCAAGTGACGATGATCATTTCTTC TTGGTCTATGAATATGTCCGCAATGGATCCCTCAGTGACCATCTCCATGAACCACTGCACAAAGGTTACCAGCCGCTTTCTTGGACAGCAAGAACACAGA TCGCAGTGGATGCTGCAAAGGGGATAGAGTACATCCATGACCATACCAAAACCAGATACGTCCATAGAGACATCAAGACCACCAACATCCTCCTCAACGA GTATCTTCGAGCCAAGGTTGCGGATTTCGGGCTGGCGAAGCTGGTGGAGAGGAGCAGCGTGGATGAGCTGATAGCCACAAGGCTAGTTGGGACTCCAGGC TACCTTCCTCCAGAGTCGGTGAAGGAGCTGCAGGTGACTTCGAAAACCGATGTGTTTGGATTCGGCGTAGTGCTGGCAGAGCTGATTACAGGGAAACGAG CTCTTGTTCGTGACAATAACGAACCTAGCAGGCTCAAATCTCTCATCACCACTCTGGCCGAGGTGTTCGAAAGCGAAGATCCACCCACAGCTGTGGAAAA AGTTGTAGACTTGAACCTTCGAAGCGGCTACCCACTCGATGACGTCTACAAGATGGCAGAGATAGCACAATGGTGTCTAAGCGAAGAGGCGGCTAACAGG CCGGAGATGAGGGACGTCGTCGGGCCGCTAGCTCAGATCGTCACCTCTTCCGTTGAATGGGAAGCCTCCATGGGCGGTGATAGCCAAGTTTTTAGTGGCA TTTTCAATGGAAGATAG
AA sequence Show only first row Show all	>Lus10026689 pacid=23164416 polypeptide=Lus10026689 locus=Lus10026689.g ID=Lus10026689.BGIv1.0 annot-version=v1.0 MASLRTKFLIIIIPNFLFLTITSQKSTPSPTTPLPPIMFPFPCSQSLPTCKASLYHSFSGHTPQQLSSFYSVPTSDIQPVPRHRRQDYLITVPCSCQTIT TTKAYFYPVSYTVQQRDTFSNVSKDIYSGQLWDEGNEEQKFVAGNNVTLNLLCGCEEEGDGNGDQIVTYTVQNGDTLSDIGQRFHASLPSMVSLNQLLEN NTVFIDIGWVLYVPRGSKGVGGVGGGADQPSSESSAKKLTALIIVLPLITAFLLAIATLIFLYRRKRQNQKMPPADKQKGAAAKFRSISTFRTAGSSIPK SFKEFTEDFEKGMIDPEGPVLYSIEEIQEATNDFDESKNIGEGGYGLVFFGVLRGKEVAIKVMRSNKSKEFYAEVNVLCKIHHINVVELLGYASDDDHFF LVYEYVRNGSLSDHLHEPLHKGYQPLSWTARTQIAVDAAKGIEYIHDHTKTRYVHRDIKTTNILLNEYLRAKVADFGLAKLVERSSVDELIATRLVGTPG YLPPESVKELQVTSKTDVFGFGVVLAELITGKRALVRDNNEPSRLKSLITTLAEVFESEDPPTAVEKVVDLNLRSGYPLDDVYKMAEIAQWCLSEEAANR PEMRDVVGPLAQIVTSSVEWEASMGGDSQVFSGIFNGR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51940			protein kinase family protein ...		Lus10026689 [exp]	0	1
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10027843 [exp]	14.3	0.6922
AT2G44220			Protein of Unknown Function (D...		Lus10036998 [exp]	14.9	0.7196
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10029484 [exp]	16.6	0.5235
AT2G16980			Major facilitator superfamily ...		Lus10004157 [exp]	17.8	0.6977
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Lus10027327 [exp]	18.5	0.6497
AT3G51240		TT6, F3'H, F3H	TRANSPARENT TESTA 6, flavanone...		Lus10041913 [exp]	19.9	0.6761
					Lus10026719 [exp]	20.0	0.6970
AT1G08930		ERD6	EARLY RESPONSE TO DEHYDRATION ...		Lus10033812 [exp]	34.6	0.6603
AT5G04200		AtMCP2f, ATMC9	metacaspase 2f, metacaspase 9 ...		Lus10010436 [exp]	39.5	0.6890
AT1G05280			Protein of unknown function (D...		Lus10039692 [exp]	45.2	0.5733

Compare expression of checked genes

Lus10026689 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.