Plant FIBer expression Database

Lus10026691 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G10710 124 / 8e-35 PHS1 poor homologous synapsis 1 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004624
[exp]
295 / 3e-101 AT1G10710 170 / 4e-50 poor homologous synapsis 1 (.1.2)
Lus10042079
[exp]
64 / 6e-13 AT1G10710 89 / 3e-21 poor homologous synapsis 1 (.1.2)
Lus10018084
[exp]
64 / 2e-12 AT1G10710 88 / 3e-20 poor homologous synapsis 1 (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G044800
[exp]
135 / 4e-39 AT1G10710 201 / 2e-62 poor homologous synapsis 1 (.1.2)
PFAM info
Representative CDS sequence
>Lus10026691 pacid=23164372 polypeptide=Lus10026691 locus=Lus10026691.g ID=Lus10026691.BGIv1.0 annot-version=v1.0
ATGGCGGGATGCTTGGCGGTGGTGCTGCATCTGAACAAGGAGGAGGAGGCGACTGAGAGATCGGGGTCCGCCGTCGAAGAATGGAGCTGGCAAGTCATGT
TCTCTCGATTCGTCCATTTCCCGACTGTTTCTGGATCGTCGCATCCGTTGCTGACTCCTGGGCGAGCCAGGAGGCGTGGTAGCGTTCGTGGAATCTGGCT
ATCTTCTTCTTCTCCGACTGCTATTCTGCAGCTTGTCGTCGATCGTTCCTGTTCGGACGCGAAGATCTCTGTCTCTCTTGGAGGAAGAGAGCTTGAAGAG
CACTATGTTTCGAAGCTGCACTTTTCATGGCCTCAGGTGTCCTGCACTGCTGGATATCCTCCCAGGGGAACAAGATCTGTTGTCGTCAGCTTCAAAGACT
CTGCTGGCTTGATCCAGAAATTCGCTTTCCAGTTCTCATCAGTTTCAGAATCCGAGTCATTCATCGCTACGTTGAAGGTTACCGAGAAACAAATCGAGTT
CCGGTTTTTCACAGCTTGA
AA sequence
>Lus10026691 pacid=23164372 polypeptide=Lus10026691 locus=Lus10026691.g ID=Lus10026691.BGIv1.0 annot-version=v1.0
MAGCLAVVLHLNKEEEATERSGSAVEEWSWQVMFSRFVHFPTVSGSSHPLLTPGRARRRGSVRGIWLSSSSPTAILQLVVDRSCSDAKISVSLGGRELEE
HYVSKLHFSWPQVSCTAGYPPRGTRSVVVSFKDSAGLIQKFAFQFSSVSESESFIATLKVTEKQIEFRFFTA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G10710 PHS1 poor homologous synapsis 1 (.1... Lus10026691
[exp]
0 1
Lus10032910
[exp]
9.1 0.6998
AT3G15270 SBP SPL5 squamosa promoter binding prot... Lus10018610
[exp]
21.1 0.6397
AT1G66430 pfkB-like carbohydrate kinase ... Lus10002101
[exp]
21.8 0.6294
AT1G60460 unknown protein Lus10036440
[exp]
23.0 0.6138
AT4G18960 MADS AG AGAMOUS, K-box region and MADS... Lus10007324
[exp]
23.0 0.6581
AT1G69420 DHHC-type zinc finger family p... Lus10026632
[exp]
24.2 0.6498
AT5G35750 AHK2 histidine kinase 2 (.1) Lus10012325
[exp]
24.8 0.6270
AT3G23550 MATE efflux family protein (.1... Lus10012960
[exp]
29.4 0.6391
AT5G19440 NAD(P)-binding Rossmann-fold s... Lus10029484
[exp]
30.0 0.5031
AT1G18640 PSP 3-phosphoserine phosphatase (.... Lus10021156
[exp]
42.6 0.6122

Lus10026691 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.