Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004622 [exp] 89 / 2e-24 AT1G60783 51 / 9e-10 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026693 pacid=23164206 polypeptide=Lus10026693 locus=Lus10026693.g ID=Lus10026693.BGIv1.0 annot-version=v1.0 ATGGGTTTGTTCGGCGACAAGTCGAAGGCCGGTGGAAAATTGGTTGTTCCGGCGGCGGGGGGTGACGGTGGTGACGATGATGACGTGTATGGAAATCCGG CGACTCCTAGGAGCGAAGGGGCGACCATTCCGGCGAGGCTGACGTGTCCTCCTCCGCCGAGGAAGCGGAGGGTGAAGCGGAACTGCAACGGCGGAGGAGG AGGAGGAGGATGTGTAAGGGAGTTCTTCAACCCGCCGGAGTTGGAAAGTTTCTTCAGTCGCCATGGTCAAAGAGCTGGTTAG
AA sequence Show only first row Show all	>Lus10026693 pacid=23164206 polypeptide=Lus10026693 locus=Lus10026693.g ID=Lus10026693.BGIv1.0 annot-version=v1.0 MGLFGDKSKAGGKLVVPAAGGDGGDDDDVYGNPATPRSEGATIPARLTCPPPPRKRRVKRNCNGGGGGGGCVREFFNPPELESFFSRHGQRAG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60783			unknown protein		Lus10026693 [exp]	0	1
AT3G63110		ATIPT3	isopentenyltransferase 3 (.1)		Lus10028015 [exp]	1.4	0.9396
AT1G24620			EF hand calcium-binding protei...		Lus10007816 [exp]	1.4	0.9468
AT5G39020			Malectin/receptor-like protein...		Lus10025544 [exp]	1.7	0.9274
AT1G48590			Calcium-dependent lipid-bindin...		Lus10003710 [exp]	4.6	0.9125
AT5G53110			RING/U-box superfamily protein...		Lus10004756 [exp]	5.6	0.8773
					Lus10025225 [exp]	6.6	0.9190
					Lus10025141 [exp]	8.9	0.9181
AT1G60783			unknown protein		Lus10004622 [exp]	11.8	0.8970
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10003944 [exp]	12.0	0.8896
					Lus10022802 [exp]	12.1	0.8870

Compare expression of checked genes

Lus10026693 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.