Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70590 413 / 6e-145 F-box family protein (.1) AT1G18260 66 / 1e-11 HRD3A, EBS5 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1) AT1G73570 60 / 1e-09 HCP-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004621 [exp] 459 / 7e-165 AT1G70590 337 / 1e-116 F-box family protein (.1) Lus10009680 [exp] 54 / 1e-07 AT1G18260 1010 / 0.0 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1) Lus10009042 [exp] 54 / 2e-07 AT1G18260 1020 / 0.0 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G045300 [exp] 475 / 1e-169 AT1G70590 434 / 2e-153 F-box family protein (.1) Potri.008G187200 [exp] 433 / 3e-153 AT1G70590 405 / 5e-142 F-box family protein (.1) Potri.012G046300 [exp] 55 / 4e-08 AT1G18260 949 / 0.0 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF08238 [flax] [poplar] Sel1 Sel1 repeat
Representative CDS sequence Show only first row Show all	>Lus10026694 pacid=23164381 polypeptide=Lus10026694 locus=Lus10026694.g ID=Lus10026694.BGIv1.0 annot-version=v1.0 ATGAAGCAGCAGGATACCTGGCCGGCGAGATCCGTCGGCAGCCGCTTCCGGACCCTTCCAATCAAGGAATCCAGTACCAAAGGATCCCATTCAACCCACC CCTCCAATTCACGCCATCGCCGGCCGAAACGAATCGAATCCAGGCCCTCAACATCGGAGGAATTGGAAATTCAAGGCTTTGCGGCGCTTCCGTTCGACAT ACTGACGAGGATCGCGGCGCCGTTCACGCTTCCGGACCTGCAGGCGGCGTCGCTGGTGTGCAAGTCCTGGAGTGAGGCTCTGAAGCCGCTGAGGGAGGCG ATGGTGTTCTTGCGGTGGGGGAAGAGGTTCAAGCACGGCCGCGGAGGAGTTAAGCCGGATATGAATAAGGCTCTTGATTCGTTTCTGAAAGGAGCGGTTC GTGGGTCGAGCTTGGCGATGGTTGATGCAGGGCTGGTGTATTGGGAGGTCGGGGAGAAGGAGAAGGCGATCGGATTGTATCGGAAGGCGGCGGAGCTTGG GGATCCGGCGGGACAGTGTAATCTCGGGATTTATTACTTGCAAGCGAAGCCTTCGAACGAGACTGAAGCAGTGAAGTGGCTGTTTCGAGCTGCGATCGGA GGACATGTTCGAGCTCAGTACCAGCTTGGACTGTGTATGCATCAGGGCAGAGGAGTTGAGTGTAGTCTTCAAGAGGCAGCGAAATGGTATCTACGAGCTG CGAGAGGCGGCTACGTTAGAGCAATGTACAATGTGGCTCTCTGCTTCTCGGTAGGAGATGGTCTAACTCACAATCACCAGCAAGCAAGGAAGTGGATGAA GCGAGCTGCCGATCGAGGCCACAGCAAGGCTCAGTTCGAATACGGACTAGGCCTCTTCTCGGAAGGGGACATGCTGAAAGCCGTGGTGTACCTAGAACTG GCGACTCGTGCAGGTGAAACGGCAGCTTCACATGTAAAGAATGTGATCTTCCAACAACTGTCTGCTCACTCGCGGGACCGGGCCATGCTTCTCGCTGACA GTTGGCTCGCAGCCTCGTCGTCACATTGA
AA sequence Show only first row Show all	>Lus10026694 pacid=23164381 polypeptide=Lus10026694 locus=Lus10026694.g ID=Lus10026694.BGIv1.0 annot-version=v1.0 MKQQDTWPARSVGSRFRTLPIKESSTKGSHSTHPSNSRHRRPKRIESRPSTSEELEIQGFAALPFDILTRIAAPFTLPDLQAASLVCKSWSEALKPLREA MVFLRWGKRFKHGRGGVKPDMNKALDSFLKGAVRGSSLAMVDAGLVYWEVGEKEKAIGLYRKAAELGDPAGQCNLGIYYLQAKPSNETEAVKWLFRAAIG GHVRAQYQLGLCMHQGRGVECSLQEAAKWYLRAARGGYVRAMYNVALCFSVGDGLTHNHQQARKWMKRAADRGHSKAQFEYGLGLFSEGDMLKAVVYLEL ATRAGETAASHVKNVIFQQLSAHSRDRAMLLADSWLAASSSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70590			F-box family protein (.1)		Lus10026694 [exp]	0	1
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10004712 [exp]	1.4	0.8827
AT3G22530			unknown protein		Lus10010549 [exp]	1.4	0.8737
AT5G57900		SKIP1	SKP1 interacting partner 1 (.1...		Lus10019104 [exp]	7.9	0.8218
AT4G02500		ATXT2, XXT2	XYG XYLOSYLTRANSFERASE 2, ARAB...		Lus10002870 [exp]	8.3	0.8492
AT1G14340			RNA-binding (RRM/RBD/RNP motif...		Lus10012843 [exp]	12.5	0.8128
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Lus10017963 [exp]	12.5	0.8413
AT4G33410		ATSPPL1	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10027484 [exp]	16.1	0.8377
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10002355 [exp]	16.5	0.7636
AT1G68140			Protein of unknown function (D...		Lus10004940 [exp]	23.2	0.8312
AT1G14920	GRAS	RGA2, GAI	RESTORATION ON GROWTH ON AMMON...		Lus10033061 [exp]	23.9	0.7984

Compare expression of checked genes

Lus10026694 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.