Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26600 621 / 0 ARO4 armadillo repeat only 4 (.1) AT4G34940 206 / 5e-58 ARO1 armadillo repeat only 1 (.1) AT5G66200 202 / 1e-56 ARO2 armadillo repeat only 2 (.1) AT4G36030 171 / 3e-45 ARO3 armadillo repeat only 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004620 [exp] 1115 / 0 AT3G26600 661 / 0.0 armadillo repeat only 4 (.1) Lus10025059 [exp] 209 / 1e-58 AT4G34940 973 / 0.0 armadillo repeat only 1 (.1) Lus10028452 [exp] 191 / 2e-52 AT5G66200 965 / 0.0 armadillo repeat only 2 (.1) Lus10041905 [exp] 191 / 3e-52 AT5G66200 966 / 0.0 armadillo repeat only 2 (.1) Lus10027837 [exp] 181 / 2e-50 AT4G34940 574 / 0.0 armadillo repeat only 1 (.1) Lus10027838 [exp] 161 / 3e-45 AT4G34940 396 / 2e-135 armadillo repeat only 1 (.1) Lus10037086 [exp] 125 / 2e-31 AT5G66200 354 / 3e-118 armadillo repeat only 2 (.1) Lus10036897 [exp] 115 / 4e-27 AT5G66200 261 / 2e-79 armadillo repeat only 2 (.1) Lus10037087 [exp] 89 / 7e-20 AT5G66200 221 / 1e-68 armadillo repeat only 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G045500 [exp] 731 / 0 AT3G26600 632 / 0.0 armadillo repeat only 4 (.1) Potri.015G082800 [exp] 558 / 0 AT3G26600 610 / 0.0 armadillo repeat only 4 (.1) Potri.005G113000 [exp] 209 / 6e-59 AT5G66200 966 / 0.0 armadillo repeat only 2 (.1) Potri.004G172500 [exp] 202 / 2e-56 AT4G34940 1020 / 0.0 armadillo repeat only 1 (.1) Potri.009G131900 [exp] 188 / 1e-51 AT4G34940 986 / 0.0 armadillo repeat only 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Lus10026695 pacid=23164265 polypeptide=Lus10026695 locus=Lus10026695.g ID=Lus10026695.BGIv1.0 annot-version=v1.0 ATGGCGATCCCGCCGCCGCTGCCACAGGCGGACCAGCAGCAGCCGCCGCCGTTTCAGGACGAACTCCGCCTCCCTATCATACTCGCAGAACGGCTCCTCG CCGCCTCCGACGAGGCTGATTCGTTCAAGACAGAGTGCGCAGCAGTTTCCAGGCACGCCGATTACATCGTTGACAAGCTCCGTCTACTCGTTCGGTTCAT CTCCACTCCGACTCAGCCGGTCTACGAGCGTCCGGTCCGTCGAATCTCATCCGAAACGGGGAGAAACCTCGACCGGGCTCTAACCCTAGTCCGCAAGTGT AGACGGCGGAGCGTCTTCTCCAGAGTTGTGACGATAATCTCCGCCGCCGACTTCCGGAAAGTCCTCACCTTTCTCGAAGCTTCCGCTGGGGATGTGACGT GGCTGTGGAGCATGATGGAGTCGAACGGGAACGCGATGGCGCTCCCTCCGATCGCCAGCAACGATCCGATCCTTGCCTGGGTTTGGGTAGGGATAGCGTC GATTTACATGGCGCCACTGCCGGAGAAGATCGATGCAGCGAATCAATTAGCCTCCTTGGCGAAGGATAACGACAGAAACAAACAGATCATCGTCGAGGAA GGAGGAGTCCCGCCGTTTCTGAAGCTGATTAAGGAGAGTCACTCATCGGAGGCGCAAATTGCCGGCGCGGCAGCGCTCTTCTATCTCTGTAACGACCGGG ATAGGGTCAGGTCAATCACTGAGGAGAGTTCAGGGATACAGACGATTGTTAAAGCTCTGGCTGATTCTCCGATGAAGGTTCAAACATGGATGGCGAAACT GGTGGCGATGATGGCTGAGAACGACCCAATTTCGCAGGACTACTTCGCTAGGGAACATGTGATTCGGCCATTGGTGACATTGCTTTCGTTCGAAACGTTT GCAGACGATCAGATCAGTGTTCAGTCCGGTAAGCAGTCGATTCATTCTTTAGTCCAATTGAACAAGAACAAGGAGAAGGATCGTGATCGAGATAAGGATA GTGTGCATTACAAGCCGTTTGTGAGCTCGTTTTCAAGCTTTCATTCAGAGAGCGGAGTGGTGATGAACAAGGGAGCAGGAACCAGAAAGGAGAGGGAGAA TGAGGATCCAGTGATTAAACTCAAGCTGAAAGCGAACTGCGCCGAAGCACTATGGATGCTGTCGAAAGGAAGCGTATCGAACAGCAAGCGAATCACCGAG ACAAAAGGACTCCTCTGCCTGGCGAAATTGGTAGAGATTGGAGACGGAGAGTTACAGTACAACTGCTTGATGACTATAAAAGAGATCACATTCGCGGCAG AGTCGAATGCCGATCTCCGACAAAGAGCGTTCAAGACAAATTCTCCAGCAGCAAAAGCAGCAGTCGAGCAGTTACTCAAAGTGATAAAAGCTTCCACCAG TCCGAAACTGTTGATCGCAGCTCTACAGTCAATCGGGTCACTAGCTCGTACTTTCCCGGCCAGGGAGACAAGAGTGATCGGTCCGTTGGTGGGCCAGCTG AACCACCGGAGCCAGGAAGTGGCAGCCGAGGCAGCCATTGCGTTAGCGAAATTCGCATGGAACGAGAACTTTTTATGTAAAGCGCATTCGAAGACAATCA TCGAGTTCCATGCGGTCCCGGCGCTGATCAAGCTTTTGCGGGGGAGCGAGAAGGTGCAGATTCGAGCGTTGGTGCTGATGTGTCACCTGGCGATGAATGC GGGGAACCACAGGGAGTTGGAACCTGCAAGGGTGCTGACCGTGCTCGAAGGTGTCGAAAAGATGGTGCTGGCTCAGTACAGTGAGTTGAGGGAGTTGGTT GCGAAGGCTGTTTACCATATTAACCTTTACCACCGTGGCCCTCATTCTCAGAGGCTCACGTTCGTGATATAG
AA sequence Show only first row Show all	>Lus10026695 pacid=23164265 polypeptide=Lus10026695 locus=Lus10026695.g ID=Lus10026695.BGIv1.0 annot-version=v1.0 MAIPPPLPQADQQQPPPFQDELRLPIILAERLLAASDEADSFKTECAAVSRHADYIVDKLRLLVRFISTPTQPVYERPVRRISSETGRNLDRALTLVRKC RRRSVFSRVVTIISAADFRKVLTFLEASAGDVTWLWSMMESNGNAMALPPIASNDPILAWVWVGIASIYMAPLPEKIDAANQLASLAKDNDRNKQIIVEE GGVPPFLKLIKESHSSEAQIAGAAALFYLCNDRDRVRSITEESSGIQTIVKALADSPMKVQTWMAKLVAMMAENDPISQDYFAREHVIRPLVTLLSFETF ADDQISVQSGKQSIHSLVQLNKNKEKDRDRDKDSVHYKPFVSSFSSFHSESGVVMNKGAGTRKERENEDPVIKLKLKANCAEALWMLSKGSVSNSKRITE TKGLLCLAKLVEIGDGELQYNCLMTIKEITFAAESNADLRQRAFKTNSPAAKAAVEQLLKVIKASTSPKLLIAALQSIGSLARTFPARETRVIGPLVGQL NHRSQEVAAEAAIALAKFAWNENFLCKAHSKTIIEFHAVPALIKLLRGSEKVQIRALVLMCHLAMNAGNHRELEPARVLTVLEGVEKMVLAQYSELRELV AKAVYHINLYHRGPHSQRLTFVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26600		ARO4	armadillo repeat only 4 (.1)		Lus10026695 [exp]	0	1
AT5G58620	C3HZnF		zinc finger (CCCH-type) family...		Lus10040662 [exp]	1.0	0.8802
AT4G08455			BTB/POZ domain-containing prot...		Lus10042763 [exp]	2.0	0.8388
AT4G35220			Cyclase family protein (.1)		Lus10014092 [exp]	4.9	0.8375
AT1G61065			Protein of unknown function (D...		Lus10018474 [exp]	5.3	0.8149
AT5G66320	GATA	GATA5	GATA transcription factor 5 (....		Lus10031096 [exp]	5.3	0.7714
AT1G28600			GDSL-like Lipase/Acylhydrolase...		Lus10011338 [exp]	5.5	0.7913
AT1G63900		DAL1	DIAP1-like protein 1, E3 Ubiqu...		Lus10008163 [exp]	6.5	0.8075
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Lus10028713 [exp]	7.4	0.8129
AT1G65910	NAC	ANAC028	NAC domain containing protein ...		Lus10010037 [exp]	8.1	0.7753
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10041300 [exp]	9.2	0.7388

Compare expression of checked genes

Lus10026695 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.