Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23570 94 / 2e-22 SGS3, ATSGS3 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019214 [exp] 198 / 8e-62 AT5G23570 515 / 2e-179 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Lus10004302 [exp] 196 / 7e-61 AT5G23570 517 / 4e-180 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G137400 [exp] 106 / 7e-27 AT5G23570 603 / 0.0 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.T045700 [exp] 106 / 7e-27 AT5G23570 604 / 0.0 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.003G021000 [exp] 74 / 2e-15 AT5G23570 439 / 3e-147 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.001G037000 [exp] 67 / 4e-13 AT5G23570 97 / 3e-21 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.001G037101 [exp] 62 / 1e-11 AT5G23570 334 / 4e-106 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.003G187800 [exp] 54 / 1e-08 AT5G23570 226 / 4e-67 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.003G188350 [exp] 49 / 5e-07 AT5G23570 269 / 7e-78 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026697 pacid=23164375 polypeptide=Lus10026697 locus=Lus10026697.g ID=Lus10026697.BGIv1.0 annot-version=v1.0 ATGGCTAGAATACAATTCTCTCGGCTTTGCCATCGAGCAAAGTTCCCGACTTTCCGGCTATTATCGAGCAAAGTTCACGACTTTTCGGAAACTTACGATG ACGTGGCATGTATGCGTGGCCATGACACACTGGCAACACGAGATGCGATCATACGAGACTACAACAGAGTGTGCAATGATAAGGTGCAGCTTAACTATTT CAAGACTAAGGTCATAAAAGAACAGAGGAATTCCAGGGCTCTTGTCGAATCGCTGGGCACTGTTAGCGAGAAGCTGAGGAAGACAATGGAGGTGAACCGT ATTGTTAGACAGAGGACCCAAATGTATCATGAGGAGAATAAAGAAGAGCTTGATTTCCAAGAGAAGTTCTTCAAAGACCAACGGGAGCATATCCTTGAAA AGAGGAAGGCTCAGGAAGAGGAATTCGAGGATCGACAGCAGGAGGAGCGGAAGAAGGTTACAGGCCAGAGCTCTTATGGGTCTAACAGTGGGGAGTACAG AACCAGGTACGGCCGTATGATTTTTAATTGGTTGATTAATGACTGA
AA sequence Show only first row Show all	>Lus10026697 pacid=23164375 polypeptide=Lus10026697 locus=Lus10026697.g ID=Lus10026697.BGIv1.0 annot-version=v1.0 MARIQFSRLCHRAKFPTFRLLSSKVHDFSETYDDVACMRGHDTLATRDAIIRDYNRVCNDKVQLNYFKTKVIKEQRNSRALVESLGTVSEKLRKTMEVNR IVRQRTQMYHEENKEELDFQEKFFKDQREHILEKRKAQEEEFEDRQQEERKKVTGQSSYGSNSGEYRTRYGRMIFNWLIND

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Lus10026697 [exp]	0	1
AT4G38590		BGAL14	beta-galactosidase 14 (.1.2)		Lus10005070 [exp]	2.4	0.9814
AT3G26790	B3	FUS3	FUSCA 3, AP2/B3-like transcrip...		Lus10012573 [exp]	2.8	0.9830
AT5G09550			GDP dissociation inhibitor fam...		Lus10035634 [exp]	3.5	0.9772
					Lus10038209 [exp]	8.4	0.9894
AT1G37140		MCT1	MEI2 C-terminal RRM only like ...		Lus10025640 [exp]	13.4	0.9570
					Lus10014949 [exp]	15.6	0.9661
AT5G56510		APUM12	pumilio 12 (.1)		Lus10024793 [exp]	16.1	0.9201
AT2G03630			unknown protein		Lus10029645 [exp]	16.2	0.9761
					Lus10034143 [exp]	16.4	0.9761
AT2G21650	MYB	RSM1, ATRL2, ME...	RADIALIS-LIKE SANT/MYB 1, MATE...		Lus10040453 [exp]	18.1	0.9798

Compare expression of checked genes

Lus10026697 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.