Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26510 126 / 7e-37 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) AT3G48240 125 / 1e-36 Octicosapeptide/Phox/Bem1p family protein (.1) AT1G70640 117 / 2e-33 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein (.1) AT5G63130 116 / 4e-33 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G49920 98 / 5e-25 Octicosapeptide/Phox/Bem1p family protein (.1) AT3G46920 98 / 8e-24 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT2G35050 96 / 4e-23 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT5G57610 94 / 2e-22 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G04700 88 / 2e-20 PB1 domain-containing protein tyrosine kinase (.1) AT2G01190 87 / 3e-20 PDE331 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000441 [exp] 199 / 4e-66 AT3G48240 69 / 4e-15 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10006214 [exp] 130 / 1e-38 AT3G26510 123 / 1e-35 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) Lus10036862 [exp] 130 / 2e-38 AT3G26510 122 / 3e-35 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) Lus10019490 [exp] 124 / 1e-35 AT3G48240 149 / 9e-46 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10043341 [exp] 121 / 6e-35 AT3G48240 145 / 2e-44 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10002938 [exp] 103 / 9e-28 AT3G48240 130 / 1e-38 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10017947 [exp] 96 / 1e-25 AT5G63130 121 / 1e-35 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10040006 [exp] 102 / 2e-25 AT3G46920 604 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10019577 [exp] 101 / 4e-25 AT3G46920 606 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G186500 [exp] 169 / 2e-53 AT3G26510 152 / 1e-46 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) Potri.010G046400 [exp] 156 / 6e-48 AT3G26510 152 / 5e-46 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) Potri.015G083400 [exp] 120 / 9e-35 AT3G48240 152 / 2e-47 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.012G085000 [exp] 119 / 3e-34 AT5G63130 139 / 4e-42 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.004G032200 [exp] 99 / 1e-24 AT4G05150 333 / 1e-110 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.011G041100 [exp] 97 / 5e-24 AT4G05150 297 / 4e-96 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.018G114300 [exp] 97 / 1e-23 AT3G46920 646 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.006G190200 [exp] 97 / 2e-23 AT3G46920 652 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.003G006200 [exp] 94 / 2e-23 AT5G49920 188 / 3e-58 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.001G052000 [exp] 93 / 4e-22 AT1G04700 721 / 0.0 PB1 domain-containing protein tyrosine kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10026700 pacid=23164349 polypeptide=Lus10026700 locus=Lus10026700.g ID=Lus10026700.BGIv1.0 annot-version=v1.0 ATGACGAATAACCTCAAATTCCTCTGCAGCTACGGAGGCAAGCTCGTCCCCCGCCACTCCGACGGAAAGCTCCGCTACCTCGGCGGCCAGACCCGCGTCC TCGCCGTCGACCGCTCCATCTCCTTCTCCGATTTAGTGACGAAATTGGGGGACTTCGCCGGAACTCCGGTGAGCTTGCGGTGTCAATTGCCGGAGGCCGA TCTGGACGATGCGTTAGTCTCGATAGTTTCCGACGAGGATCTGGCGAACTTGATCGAGGTGTACGACCGATTCTCGTCTCTAAAGATTCGGGCTTTCCTT TCGATTCCGAGGAATCGGTCCTCTCCTCTGCTTTCCTCTTCATCTTCATCGTCGTTGTCGTCTTCCTCTTCGTCTTTGTCGTCAGCTTCGTCATCGAATT CTTCCTCTGCTGCAACAATCGGTAGTCCAAGGTGTTCTCGGTGTCGGATTCCGAAACCACCGGCGAAGAAGGTTGCCGCCGGTTATTATGCTCCAGGGAG CCATGGTGGTCGTGTGTACCTTGTACACAACGGGAATCACTGGCAATAA
AA sequence Show only first row Show all	>Lus10026700 pacid=23164349 polypeptide=Lus10026700 locus=Lus10026700.g ID=Lus10026700.BGIv1.0 annot-version=v1.0 MTNNLKFLCSYGGKLVPRHSDGKLRYLGGQTRVLAVDRSISFSDLVTKLGDFAGTPVSLRCQLPEADLDDALVSIVSDEDLANLIEVYDRFSSLKIRAFL SIPRNRSSPLLSSSSSSSLSSSSSSLSSASSSNSSSAATIGSPRCSRCRIPKPPAKKVAAGYYAPGSHGGRVYLVHNGNHWQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26510			Octicosapeptide/Phox/Bem1p fam...		Lus10026700 [exp]	0	1
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10037156 [exp]	1.4	0.9604
AT3G48240			Octicosapeptide/Phox/Bem1p fam...		Lus10000441 [exp]	2.2	0.9738
AT3G13750		BGAL1	beta-galactosidase 1, beta gal...		Lus10015625 [exp]	5.3	0.9413
AT5G57655			xylose isomerase family protei...		Lus10001321 [exp]	9.0	0.9558
AT5G57655			xylose isomerase family protei...		Lus10006983 [exp]	10.4	0.9537
AT4G19420			Pectinacetylesterase family pr...		Lus10035682 [exp]	11.5	0.9376
AT4G19420			Pectinacetylesterase family pr...		Lus10037269 [exp]	11.5	0.9383
AT1G10600		AMSH2	associated molecule with the S...		Lus10030613 [exp]	13.0	0.9496
AT1G21000			PLATZ transcription factor fam...		Lus10000952 [exp]	16.4	0.9536
AT4G34030		MCCB	3-methylcrotonyl-CoA carboxyla...		Lus10019848 [exp]	18.2	0.9453

Compare expression of checked genes

Lus10026700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.