Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027003 [exp] 341 / 9e-121 ND / Lus10041636 [exp] 150 / 1e-44 ND / Lus10024084 [exp] 148 / 5e-44 ND / Lus10005395 [exp] 144 / 2e-42 ND / Lus10005397 [exp] 134 / 2e-38 ND / Lus10005398 [exp] 114 / 2e-31 ND / Lus10022893 [exp] 103 / 5e-27 ND / Lus10024931 [exp] 99 / 8e-25 ND / Lus10022894 [exp] 98 / 3e-24 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026703 pacid=23176548 polypeptide=Lus10026703 locus=Lus10026703.g ID=Lus10026703.BGIv1.0 annot-version=v1.0 ATGACCTCCGCGGAGACGGTACTTGGATTGCCCAGGTACATGCTACTCGAAACCAAATACAGGGACCAGCAAACCGGATTCGACGAGTACAAACTCCTTC ACTACCTCTGGAACGATGAGTTCGCCCCCTACTACAAAGGGTTCGGTAGCGTTAGAGATTTGGACCCTGCAAGCAGCCCGTTCGTAATGCTGGAGGTTGT CCCTTCCACAAGTCGCCCAACGACCCACGTCCACCTCCGTTGCTCCTACAATAACAAGTACCTGCGTCTCGAACTGCACCCCACCATCGCCGAACTCAGC TACCTCGTTGCCACTGCCAATGCTCCCAACGAGAGCAACACGGGGTCCAACGAATCCACACTCTTCAGTCCGCACAGGTTCCCCGGGAACATCGTCTCCT TCGAGCACAACTCCGGACGTTGGTTGCAATCACCCACATTTACCGCGGCCTATGTGTATGCGAATGAGGGCGACAGTGGGGTTTTCTTCAAGTATTCGCG ATGGGAATCTTACGTGGATAGGCTCAAGGCCAAGGATCAGGAGATCAAGAGGCTGACTGATTTGCTTGCTGAGTTCCATTCAAGTGATGGCGAGAGCCTT ACGCCTGCTGAAGTTATTCGTGAGCTCAGGGAACATATTGCTGAGCAGAACAAGCTTATTGAGGAGCTCTACGAACAAATCGGCAGCCGTCCAGCAGCTG CGGAAGCCACCACCAAAGCAGCCGCCAACTGA
AA sequence Show only first row Show all	>Lus10026703 pacid=23176548 polypeptide=Lus10026703 locus=Lus10026703.g ID=Lus10026703.BGIv1.0 annot-version=v1.0 MTSAETVLGLPRYMLLETKYRDQQTGFDEYKLLHYLWNDEFAPYYKGFGSVRDLDPASSPFVMLEVVPSTSRPTTHVHLRCSYNNKYLRLELHPTIAELS YLVATANAPNESNTGSNESTLFSPHRFPGNIVSFEHNSGRWLQSPTFTAAYVYANEGDSGVFFKYSRWESYVDRLKAKDQEIKRLTDLLAEFHSSDGESL TPAEVIRELREHIAEQNKLIEELYEQIGSRPAAAEATTKAAAN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10026703 [exp]	0	1
					Lus10027003 [exp]	1.4	0.8762
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10028508 [exp]	3.9	0.8428
AT2G17080			Arabidopsis protein of unknown...		Lus10025119 [exp]	19.7	0.8442
AT4G35200			Arabidopsis protein of unknown...		Lus10023953 [exp]	27.8	0.8319
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10002661 [exp]	28.8	0.8359
AT3G19850			Phototropic-responsive NPH3 fa...		Lus10030554 [exp]	32.4	0.8405
AT4G35200			Arabidopsis protein of unknown...		Lus10023958 [exp]	38.2	0.8343
AT1G65620	AS2	AS2	ASYMMETRIC LEAVES 2, Lateral o...		Lus10013610 [exp]	39.5	0.7464
AT1G04610		YUC3	YUCCA 3 (.1)		Lus10043144 [exp]	41.9	0.8167
					Lus10033372 [exp]	43.1	0.8211

Compare expression of checked genes

Lus10026703 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.