Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01430 194 / 1e-64 Got1/Sft2-like vescicle transport protein family (.1.2) AT3G49420 194 / 1e-64 Got1/Sft2-like vescicle transport protein family (.1) AT3G03180 164 / 9e-53 Got1/Sft2-like vescicle transport protein family (.1) AT1G05785 99 / 8e-27 Got1/Sft2-like vescicle transport protein family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025494 [exp] 201 / 3e-67 AT3G49420 218 / 2e-74 Got1/Sft2-like vescicle transport protein family (.1) Lus10019570 [exp] 107 / 2e-28 AT1G05785 187 / 2e-59 Got1/Sft2-like vescicle transport protein family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G036000 [exp] 201 / 4e-67 AT5G01430 201 / 2e-67 Got1/Sft2-like vescicle transport protein family (.1.2) Potri.007G124400 [exp] 200 / 5e-67 AT5G01430 199 / 5e-67 Got1/Sft2-like vescicle transport protein family (.1.2) Potri.014G151000 [exp] 107 / 2e-30 AT1G05785 157 / 3e-50 Got1/Sft2-like vescicle transport protein family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04178 [flax] [poplar] Got1 Got1/Sft2-like family
Representative CDS sequence Show only first row Show all	>Lus10026704 pacid=23176625 polypeptide=Lus10026704 locus=Lus10026704.g ID=Lus10026704.BGIv1.0 annot-version=v1.0 ATGGTTTCGTTTGAAATGAACGATCGCAAAACTACCTCCTTAAACTGTTTCACTTATGCATTAGTGTACAACTATGTCTCTTATCGTCTCTTCATGTCCC TGGGTGAAACAGAAATTGGGATGGGACTGACAGGATTTGGCATCTTTTTCTCCTTTCTGGGGATCGTCTTCTTCTTTGACAAGGGACTACTTGCCATGGG AAATATCCTCTTTATCTCTGGAGTGGGTCTCACTATTGGACTGAAGTCTACCATGCAGTTCTTCATGAAACGTCAAAACTATAAGGGGACTATCTCATTT GGTGCAGGTTTCTTCTTTGTTGTGATAGGATGGCCCATTATTGGCATGATTCTGGAGACTTATGGGTTTGTTATGCTCTTCAGTGGCTTCTGGCCAACAC TCTCGGTATTCATCCAGAGGATACCAGTTCTTGGTTGGATCTTCCAGCTACCAGCAGTCAGAGCATTCTTCGATCGATACCGAAGCAAAAGAGTGCCTGT CTGA
AA sequence Show only first row Show all	>Lus10026704 pacid=23176625 polypeptide=Lus10026704 locus=Lus10026704.g ID=Lus10026704.BGIv1.0 annot-version=v1.0 MVSFEMNDRKTTSLNCFTYALVYNYVSYRLFMSLGETEIGMGLTGFGIFFSFLGIVFFFDKGLLAMGNILFISGVGLTIGLKSTMQFFMKRQNYKGTISF GAGFFFVVIGWPIIGMILETYGFVMLFSGFWPTLSVFIQRIPVLGWIFQLPAVRAFFDRYRSKRVPV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49420			Got1/Sft2-like vescicle transp...		Lus10026704 [exp]	0	1
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10032274 [exp]	4.6	0.9273
AT1G28490		OSM1, ATSYP61, ...	syntaxin of plants 61 (.1.2)		Lus10017686 [exp]	5.8	0.9177
AT1G73177		APC13, BNS	anaphase-promoting complex 13,...		Lus10007286 [exp]	6.9	0.9080
AT5G20090			Uncharacterised protein family...		Lus10025851 [exp]	8.4	0.9090
AT3G48140			B12D protein (.1)		Lus10042151 [exp]	8.9	0.9103
AT5G58740			HSP20-like chaperones superfam...		Lus10018234 [exp]	10.4	0.9093
AT5G02270		ABCI20, ATNAP9	ARABIDOPSIS THALIANA NON-INTRI...		Lus10010838 [exp]	11.5	0.9058
AT3G48140			B12D protein (.1)		Lus10004241 [exp]	12.0	0.9074
AT5G47790	FHA		SMAD/FHA domain-containing pro...		Lus10001916 [exp]	13.0	0.9036
AT1G64385			unknown protein		Lus10032376 [exp]	13.8	0.9061

Compare expression of checked genes

Lus10026704 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.