Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54380 44 / 0.0001 spliceosome protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025495 [exp] 446 / 1e-158 AT1G54380 50 / 1e-06 spliceosome protein-related (.1) Lus10023803 [exp] 124 / 2e-35 ND 34 / 0.003 Lus10011880 [exp] 62 / 2e-10 AT1G54380 281 / 3e-90 spliceosome protein-related (.1) Lus10022813 [exp] 59 / 2e-09 AT1G54380 283 / 2e-91 spliceosome protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G124150 [exp] 68 / 2e-12 AT1G54380 253 / 2e-75 spliceosome protein-related (.1) Potri.017G036200 [exp] 66 / 2e-11 AT1G54380 264 / 2e-79 spliceosome protein-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026705 pacid=23176629 polypeptide=Lus10026705 locus=Lus10026705.g ID=Lus10026705.BGIv1.0 annot-version=v1.0 ATGTATCAGCACCCAGATACACATTTCGAGATCGCCGCCGGCCGCCCCTCCACTTCCACCGCTTCTTCCTCCTCCTCCTCTCTACTCGCCGCCGCGATCA AAGATTCCAGCCGATCATTCACCGGCAAACAAAGAAACCCACATCCTCGCTATCTCGCCAAACTTGCTGTTCCTCAAATATGGCAGCAGAAGAAGAAAGC CGCCGCTCAAGAAGAAACCCTGCTTCTCGGGTCCACTAGTCACTGGACCATGTATTCGTGCCTCGATTCACGCCCCGCAGATTCCGGAAACGGCGGGTTG GACATCGTCGGCGTCGAGAGCTTCCTGCTGGAGAAGGACAATAACTTTCTCGCTGAAATTGGAGGCAAAGGAGCAATCTTTAACAACGGCAAGACCGGAT TTGAACGAAGACCACCTCCTTCTCTCAAGGTTCAAATGGTTGATGACACAGTGTTAATTGAACCTGATTCGACAGTCTTTCCGAAAAGGGCATCTAATAC TACAATGAATTGGAAGAGGACGCAGAATCACCGAGGTGCTTACCACCAAGATGCAAACAAGAAGACGAACAAAATGCCAAGATTGAGGGAGGGCGAAGGC TCTCGTCCTGAAGCTGGAAATGGTGCGGTGATCAAGAAGTACTCGAGGGAACAGATGGAGGGTATGAGATTTGTCAACGGTGGGGAGCAGCGTAAGATCT GGACGAGTGTGTACACTGGATTAGGAGCTCGTGTTGCGGAGGAGTATGAGAATTTGACTTCTTGCTGTGATAGCCAGAGGAATGCGGTGGGTCCCAGATT CGAGCCTAAACAGAGCCTTGGAGGAACTCCAGTTGTTGTGGCCCCTCGTCTGCTAGGTGAGTTGTGTGAAAATTTCCATGCTGAGTTGATTCTCAAGAAC AAATCTTTTCTGGTTGTGTTAATTGCCGTTTCTCTGTTCATAATGCTATCTTTACAAATGGTTATGTTATTTCCCATGTTGTGTTTGCTCCAGTCCTGCA AGAATCGCCCTTTATAG
AA sequence Show only first row Show all	>Lus10026705 pacid=23176629 polypeptide=Lus10026705 locus=Lus10026705.g ID=Lus10026705.BGIv1.0 annot-version=v1.0 MYQHPDTHFEIAAGRPSTSTASSSSSSLLAAAIKDSSRSFTGKQRNPHPRYLAKLAVPQIWQQKKKAAAQEETLLLGSTSHWTMYSCLDSRPADSGNGGL DIVGVESFLLEKDNNFLAEIGGKGAIFNNGKTGFERRPPPSLKVQMVDDTVLIEPDSTVFPKRASNTTMNWKRTQNHRGAYHQDANKKTNKMPRLREGEG SRPEAGNGAVIKKYSREQMEGMRFVNGGEQRKIWTSVYTGLGARVAEEYENLTSCCDSQRNAVGPRFEPKQSLGGTPVVVAPRLLGELCENFHAELILKN KSFLVVLIAVSLFIMLSLQMVMLFPMLCLLQSCKNRPL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10026705 [exp]	0	1
AT5G03110			unknown protein		Lus10026490 [exp]	5.8	0.8705
AT4G15248	CO		B-box type zinc finger family ...		Lus10027151 [exp]	10.4	0.8577
AT5G62140			unknown protein		Lus10015008 [exp]	11.5	0.8595
AT4G02440		EID1	EMPFINDLICHER IM DUNKELROTEN L...		Lus10030373 [exp]	14.0	0.8565
AT1G76180		ERD14	EARLY RESPONSE TO DEHYDRATION ...		Lus10021827 [exp]	19.5	0.8519
AT1G79420			Protein of unknown function (D...		Lus10001843 [exp]	19.8	0.8487
AT3G21150	CO	EIP6, BBX32	EMF1-Interacting Protein 1, B-...		Lus10033380 [exp]	30.0	0.8383
AT4G14690		ELIP2	EARLY LIGHT-INDUCIBLE PROTEIN ...		Lus10039379 [exp]	30.0	0.8408
AT2G17840		ERD7	EARLY-RESPONSIVE TO DEHYDRATIO...		Lus10014132 [exp]	30.9	0.8488
AT5G03110			unknown protein		Lus10019920 [exp]	32.2	0.8480

Compare expression of checked genes

Lus10026705 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.