Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59350 613 / 0 Protein kinase superfamily protein (.1.2.3) AT2G43230 591 / 0 Protein kinase superfamily protein (.1.2) AT2G30740 565 / 0 Protein kinase superfamily protein (.1) AT1G06700 557 / 0 Protein kinase superfamily protein (.1.2) AT2G30730 489 / 9e-174 Protein kinase superfamily protein (.1) AT2G47060 474 / 2e-167 PTI1-4 Pto-interacting 1-4, Protein kinase superfamily protein (.1.2.3.4.5) AT3G17410 464 / 2e-163 Protein kinase superfamily protein (.1) AT2G41970 461 / 1e-162 Protein kinase superfamily protein (.1) AT3G62220 455 / 4e-160 Protein kinase superfamily protein (.1) AT1G48210 454 / 2e-159 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025498 [exp] 779 / 0 AT3G59350 630 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10026706 [exp] 687 / 0 AT3G59350 613 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10025496 [exp] 682 / 0 AT3G59350 610 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10038042 [exp] 482 / 9e-171 AT3G62220 588 / 0.0 Protein kinase superfamily protein (.1) Lus10009983 [exp] 481 / 2e-170 AT3G62220 586 / 0.0 Protein kinase superfamily protein (.1) Lus10010072 [exp] 481 / 2e-170 AT3G62220 592 / 0.0 Protein kinase superfamily protein (.1) Lus10004524 [exp] 477 / 9e-169 AT3G62220 591 / 0.0 Protein kinase superfamily protein (.1) Lus10029295 [exp] 475 / 5e-168 AT2G41970 562 / 0.0 Protein kinase superfamily protein (.1) Lus10016247 [exp] 475 / 5e-168 AT2G41970 563 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G036300 [exp] 660 / 0 AT3G59350 632 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.007G124000 [exp] 630 / 0 AT2G43230 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.016G059600 [exp] 481 / 2e-170 AT2G41970 600 / 0.0 Protein kinase superfamily protein (.1) Potri.006G194000 [exp] 479 / 1e-169 AT2G41970 586 / 0.0 Protein kinase superfamily protein (.1) Potri.002G188600 [exp] 476 / 2e-168 AT3G62220 595 / 0.0 Protein kinase superfamily protein (.1) Potri.014G114200 [exp] 473 / 2e-167 AT3G62220 577 / 0.0 Protein kinase superfamily protein (.1) Potri.010G001500 [exp] 434 / 6e-152 AT1G48210 494 / 3e-176 Protein kinase superfamily protein (.1.2) Potri.002G194700 [exp] 275 / 3e-85 AT4G02010 958 / 0.0 Protein kinase superfamily protein (.1) Potri.014G119100 [exp] 274 / 7e-85 AT4G02010 993 / 0.0 Protein kinase superfamily protein (.1) Potri.014G194300 [exp] 270 / 4e-83 AT2G20300 966 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10026708 pacid=23176613 polypeptide=Lus10026708 locus=Lus10026708.g ID=Lus10026708.BGIv1.0 annot-version=v1.0 ATGGAGGGGAAGGATTACAATTCCCCTAACCTTGTGACCCATGCGCCTGCTCCTGGATACTTTGTACGCTTGGAGAACAAAAGGGCTGAACATAAACAGA AACACAATCACGATTTACGTTTGAAGAAAAGAAACAGGATGCGTCGGTGGCTTTGCTGCACCTGCCAAATGGAGGAGGCATATCCTTTACACGAAAATGA GCTCCTACGGAGCCCAAAGCATAACCAGGATGGGCACCCAAAAGGCTCAAATGCTTCAGCCCTTGTCATACCTGAAGTACATAAAGAAGTACCACCCATT CAAGTCCCTGCTCTTTCGTTAGATGAAATGAAAGAGAAAACTGATAATTTCGGGTCGAAGGCACTAATCGGTGAAGGATCTTACGGCAGAGTGTATTTCG CAAACTTAGATAATGGGAAATCCGTGGCTGTGAAGAAACTTGACGTGTCAAGTGAGCCAGAAACAAATAACGAATTTTTGGCCCAGGTTTCTATGGTATC AAGATTGAAACATGAGAATTTTGTGGAATTGCAAGGGTATTGTGTTGCGGGAAATCTCAGGGTGCTTGCTTATGAATTTGCAACAATGGGATCTCTTCAT GACATATTGCATGGTCGAAAGGGGGTTCAAGGGGCACAACCTGGTCCGGTGCTGGACTGGATACAACGAGTCAGAATTGCAGTTGATGCAGCAAGGGGTT TGGAATATTTGCATGAGAAAGTTCAGCCTTCCATAATACACAGAGATGTCAGATCGAGCAATGTGCTTCTATTTGAGGATTTCAAAGCCAAGATTGCAGA TTTTAACCTATCAAATCAGGCCCCTGACATGGCCGCACGTCTGCATTCTACTCGCGTTCTGGGGACTTTCGGTTATCATGCTCCAGAGTACGCAATGACT GGACAATTGACACAGAAGAGTGATGTTTACAGCTTCGGGGTGGTTCTCCTCGAACTTCTCACTGGAAGGAAACCAGTCGATCATACCATGCCCCGAGGTC AACAAAGTTTAGTCACCTGGGCTACTCCAAGATTAAGTGAAGACAAAGTGAAGCAATGTGTGGACCCAAAGCTGAAAGGAGAGTACCCACCTAAAGGAGT CGCCAAGTTGGCAGCTGTGGCGGCATTGTGCGTGCAGTACGAATCAGAGTTTCGGCCAAACATGAGCATCGTTGTGAAGGCTTTGCAGCCACTGCTAAAA TCTCAAGTCCCTTCTGCTGTTGCTGCTGCCCCAGAATCCTGA
AA sequence Show only first row Show all	>Lus10026708 pacid=23176613 polypeptide=Lus10026708 locus=Lus10026708.g ID=Lus10026708.BGIv1.0 annot-version=v1.0 MEGKDYNSPNLVTHAPAPGYFVRLENKRAEHKQKHNHDLRLKKRNRMRRWLCCTCQMEEAYPLHENELLRSPKHNQDGHPKGSNASALVIPEVHKEVPPI QVPALSLDEMKEKTDNFGSKALIGEGSYGRVYFANLDNGKSVAVKKLDVSSEPETNNEFLAQVSMVSRLKHENFVELQGYCVAGNLRVLAYEFATMGSLH DILHGRKGVQGAQPGPVLDWIQRVRIAVDAARGLEYLHEKVQPSIIHRDVRSSNVLLFEDFKAKIADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMT GQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKGEYPPKGVAKLAAVAALCVQYESEFRPNMSIVVKALQPLLK SQVPSAVAAAPES

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59350			Protein kinase superfamily pro...		Lus10026708 [exp]	0	1
AT3G59350			Protein kinase superfamily pro...		Lus10025498 [exp]	1.0	0.8988
AT3G59350			Protein kinase superfamily pro...		Lus10025496 [exp]	2.0	0.8537
AT2G39290		PGP1, PGS1, PGP...	phosphatidylglycerolphosphate ...		Lus10040348 [exp]	4.0	0.8267
AT1G15060			Uncharacterised conserved prot...		Lus10043481 [exp]	4.2	0.8131
AT5G15880			unknown protein		Lus10034091 [exp]	4.2	0.8034
AT5G42930			alpha/beta-Hydrolases superfam...		Lus10009361 [exp]	4.7	0.7971
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10014845 [exp]	5.1	0.7964
AT5G04850		VPS60.2	SNF7 family protein (.1.2)		Lus10034131 [exp]	7.6	0.7720
AT1G55270			Galactose oxidase/kelch repeat...		Lus10019425 [exp]	7.7	0.7964
AT3G25040		ERD2B	endoplasmic reticulum retentio...		Lus10022785 [exp]	8.1	0.8299

Compare expression of checked genes

Lus10026708 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.