Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22660 538 / 0 Polynucleotide adenylyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025499 [exp] 1003 / 0 AT1G22660 619 / 0.0 Polynucleotide adenylyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G111300 [exp] 706 / 0 AT1G22660 637 / 0.0 Polynucleotide adenylyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0260 [flax] [poplar] NTP_transf PF01743 [flax] [poplar] PolyA_pol Poly A polymerase head domain
Representative CDS sequence Show only first row Show all	>Lus10026711 pacid=23176543 polypeptide=Lus10026711 locus=Lus10026711.g ID=Lus10026711.BGIv1.0 annot-version=v1.0 ATGGCCGTTGGACGCTCTAGTACCCAGTCACTACCGCCATCAACCTACGTAACTCGATTCACCCCTGTTCCTGGATCCGCCACGGCTCACCAACCACCAA TTGCCATTGGACACTATGGTACTACACAATTGGTAGTCGTCCCTCAACAAGTAGCACCCCGTTCTCTTTGGTGGATCTCATCGAAGCTCCTACGTTCTAG GAGTTTGAGTACCATTGATTTGGGAGTTGAACAACTATGGTATGGCTCTAATAAGGTGGCTTTAGGCCCCAAGTTTGTTAGGTTCTTCAATTCTTTACTT TGTCTTCTACACAAGCATGAAAATAGGTGTTTTCATGATCCGGTTCCATGTAACTTTGAAATTGTGGACGGAGACGAGCAAGATAAAGGTTGGGTTGGTC GCTGTAATCGGAGACTTCGACCGGTCAAACAAGGTCAACCGCCAACCGCCAACCGTTTTCGCTCACTCAAGGTCGGACCGGTCCGATCCGGAATAGATAA CACTGTTACACTCGAATCCCAGCCTTCATCTCTAAAATTCCAGCCTTGCCGTCTCCTTCTCCTATCTCCAGCTCTCTCCCGTGCCTCTTCAAGCTGGTTC CTAGGGTCCGCTGCCCTTAGTTCAGCTCGAATCGTGAATCCAAACACCTCACTTCTCCATCTTCGTTCATCCACAACAATGACTAGCGTTCCCTCTTCGA AGATGGTGGTTCCGGTAAGGGACGACATTGAACTGACGGATATCGAAATGAAGATTTTCGACAGGCTCCTAGCCACCATCAGCCACTTCAATCTCGACAT AGTGCTCCGTGTCGCCGGCGGCTGGGTCCGTGACAAGCTGCTGGGCAAGGATTGCTACGACATTGATATTGCCATTGACAAAATGTTTGGTAGTGAATTT GTTGATAAGTTAAGAGAGTATTTGGAAACCATTGGAGAAGAAGCTCAGGGAGTTGGTGTCATTGCTCGCAATCCTGACCAATCCAAACACTTGGAAACTG CAAGGATGAGGTTGTTTGATTTGTGGATTGATTTTGTTAACTTGAGGTGTGAAGATTACAGTGATAGCAGTCGGATCCCTACTATGACGTTTGGCACAGC AAAAGAAGATGCATATAGAAGAGATTTAACCATTAACAGCTTGTTCTATAATATTAATGAAAAATCAGTTGAAGACCTTACAGGCAGAGGTGCAAGGTTT GAGTTTGTGCTTGATGAAGATCTCAAAGAGGCTGCTAAAACCGAGGAAGTGAAAAATGCTCTTGCTGCTAAAATTAGCAAAGAGCGTATTGGAACGGAAA TTGAGCTAATGATCTCTGGGAATCAACCTGTGAAGGCTATGTCATACATAACTGATTTGACATTATATATGGTTGTCTTCTGTCTCCCTCCTGAGGTCCA GCCGGATGTCTACCAAGGATGTGAAAAGATGTCCATAGCTTACTTGGATGCAGCATGTAGTCTGATTCATTCAATCGGATATGCTTCCTTCACTGATCAG CAAAGACGACTTGCTTTATATGCAGCTCTGTTTCTTCCTTTCAGAGAGATAAAATACAAGGTTGCAAAAGGAAAAATGATGTCTGTTGTTAACTATATCT TCAGAGACTCTCTTAAACAGAAAGCCAGTGATCCAGAAATGGTGATGAAGATACACCAGTCATTAGATAAATTTGCTACATTGATTCCTGCACTTACATC CAAGGCCGAAACCAAAACCATACATCCTGAAATTGATGAGGAAATGGAATTCGATGATGTACCCGCAACTTCAAAGCTCCGAATTTCAACAGGATTCCTA TTGCGAGACGTAAAAGATCTTTGGCGAATTGCTGTACTCATATCCACACTATTGCATCCTCACGACTTGGCTTCTGTCAGGAAGGTTAGTCAACTTGAGC TTGACAAGAGGAAGGACTTGTTCAAAGCAGCAGAGGATGCCATCACGGAACTAGGTCTGGACAATGTATGGGACATGAAGCCATTGATCAACGGCAAAGA AATCATCAATCTTCTTCAGCTTAAATCAGGAGGCCCCCTTGTTCGAGAATGGCAACAAAAACTACTGGCATGGCAACTTGCTCATCCAACTGGGACTGCA GAGGAGTGCCTTGACTGGATGAAGGAAACCCACACCAAGCGTGCCAAAACTGAATAG
AA sequence Show only first row Show all	>Lus10026711 pacid=23176543 polypeptide=Lus10026711 locus=Lus10026711.g ID=Lus10026711.BGIv1.0 annot-version=v1.0 MAVGRSSTQSLPPSTYVTRFTPVPGSATAHQPPIAIGHYGTTQLVVVPQQVAPRSLWWISSKLLRSRSLSTIDLGVEQLWYGSNKVALGPKFVRFFNSLL CLLHKHENRCFHDPVPCNFEIVDGDEQDKGWVGRCNRRLRPVKQGQPPTANRFRSLKVGPVRSGIDNTVTLESQPSSLKFQPCRLLLLSPALSRASSSWF LGSAALSSARIVNPNTSLLHLRSSTTMTSVPSSKMVVPVRDDIELTDIEMKIFDRLLATISHFNLDIVLRVAGGWVRDKLLGKDCYDIDIAIDKMFGSEF VDKLREYLETIGEEAQGVGVIARNPDQSKHLETARMRLFDLWIDFVNLRCEDYSDSSRIPTMTFGTAKEDAYRRDLTINSLFYNINEKSVEDLTGRGARF EFVLDEDLKEAAKTEEVKNALAAKISKERIGTEIELMISGNQPVKAMSYITDLTLYMVVFCLPPEVQPDVYQGCEKMSIAYLDAACSLIHSIGYASFTDQ QRRLALYAALFLPFREIKYKVAKGKMMSVVNYIFRDSLKQKASDPEMVMKIHQSLDKFATLIPALTSKAETKTIHPEIDEEMEFDDVPATSKLRISTGFL LRDVKDLWRIAVLISTLLHPHDLASVRKVSQLELDKRKDLFKAAEDAITELGLDNVWDMKPLINGKEIINLLQLKSGGPLVREWQQKLLAWQLAHPTGTA EECLDWMKETHTKRAKTE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22660			Polynucleotide adenylyltransfe...		Lus10026711 [exp]	0	1
AT1G22660			Polynucleotide adenylyltransfe...		Lus10025499 [exp]	1.0	0.8968
AT3G04160			unknown protein		Lus10021983 [exp]	1.4	0.8424
AT4G35740		ATRECQ3, RECQL3	A. THALIANA RECQ HELICASE 3, D...		Lus10041840 [exp]	2.0	0.8261
AT3G55080			SET domain-containing protein ...		Lus10040345 [exp]	3.9	0.8165
AT1G48310		CHR18, CHA18	chromatin remodeling factor18 ...		Lus10039409 [exp]	4.6	0.8097
AT3G06960		TGD4, PDE320	TRIGALACTOSYLDIACYLGLYCEROL 4,...		Lus10022978 [exp]	5.8	0.7668
AT3G13690			Protein kinase protein with ad...		Lus10006148 [exp]	7.3	0.7659
AT1G10510		EMB2004	embryo defective 2004, RNI-lik...		Lus10030829 [exp]	13.4	0.7944
AT4G25120		ATSRS2	ARABIDOPSIS THALIANA SUPPRESSO...		Lus10016712 [exp]	16.1	0.8318
AT4G39860			unknown protein		Lus10041695 [exp]	16.8	0.8101

Compare expression of checked genes

Lus10026711 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.