Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44590 74 / 1e-16 60S acidic ribosomal protein family (.1.2) AT2G27710 67 / 2e-14 60S acidic ribosomal protein family (.1.2.3.4) AT2G27720 58 / 7e-11 60S acidic ribosomal protein family (.1.2.3) AT3G28500 57 / 2e-10 60S acidic ribosomal protein family (.1) AT5G40040 56 / 5e-10 60S acidic ribosomal protein family (.1) AT1G13570 51 / 3e-07 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020638 [exp] 156 / 4e-48 AT1G13570 37 / 0.002 F-box/RNI-like superfamily protein (.1) Lus10004852 [exp] 164 / 3e-47 AT1G13570 147 / 6e-39 F-box/RNI-like superfamily protein (.1) Lus10004849 [exp] 149 / 1e-43 ND 41 / 6e-04 Lus10020637 [exp] 126 / 1e-35 AT3G58940 47 / 3e-06 F-box/RNI-like superfamily protein (.1) Lus10026714 [exp] 110 / 2e-30 AT3G44590 96 / 6e-27 60S acidic ribosomal protein family (.1.2) Lus10004851 [exp] 100 / 2e-24 AT1G13570 139 / 7e-37 F-box/RNI-like superfamily protein (.1) Lus10043377 [exp] 92 / 7e-23 AT2G27710 102 / 8e-29 60S acidic ribosomal protein family (.1.2.3.4) Lus10003016 [exp] 95 / 2e-22 AT1G13570 81 / 1e-16 F-box/RNI-like superfamily protein (.1) Lus10011048 [exp] 93 / 1e-21 AT1G13570 127 / 2e-32 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G146200 [exp] 84 / 2e-20 AT2G27710 89 / 2e-24 60S acidic ribosomal protein family (.1.2.3.4) Potri.004G185800 [exp] 84 / 2e-20 AT2G27710 89 / 4e-24 60S acidic ribosomal protein family (.1.2.3.4) Potri.010G236400 [exp] 74 / 1e-16 AT2G27710 90 / 1e-24 60S acidic ribosomal protein family (.1.2.3.4) Potri.008G110400 [exp] 50 / 5e-07 AT1G13570 419 / 2e-144 F-box/RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00428 [flax] [poplar] Ribosomal_60s 60s Acidic ribosomal protein
Representative CDS sequence Show only first row Show all	>Lus10026712 pacid=23176532 polypeptide=Lus10026712 locus=Lus10026712.g ID=Lus10026712.BGIv1.0 annot-version=v1.0 ATGAAGCTTGTCGCCGCCTACCTGCTCGCCGTTCTGGGAGGCAACACCACTCCCACCGCCGATGACTTGAAGTCTATCCTCGCTAGCGTGGGTGCTGACG CCGATAATGAGAAGATCGAGTTTCTCCTGTCCCAAGTGAAAGGAAGAGACAGCGCAGAGATGATCGCCTCTGGTTTGGAGAAGTTGGCCTCCGTGCCTTC TGGTGGAGGCAGCTGCGGTGCAGTTGCTGATTCTGCAGCAGCCCCAGCCGGTGTTTCTGCACCAGCGGCAGAGGCAAAGAAGGAAGAGAAGGTTGAGGAT AAAGAGGAGTCTGATGGGTACCTTGCAAGAGGTTTCAACAGTATTGAGCAAGCTAAAGATCTGAGCCCGAGGGAAGTGCGTAGGCATATGGTCTTGCACA ATGTGTGTTTGAGGACACAAGGCCATGTTACCACTATTCTCCTTATGATTGTGAAATCACCTAATCTGCAACGACTCGGAATTACCATGCAGAGCATACC TGGGACATCAGTGTCGAACATAAGTTTCCATGGACCGTCTGAGGTTGAGCTAAGTCGACTGAAGATAGTGGGAGTGAAGAATCTGAAGGGTACAGGACAT GAAATGGCTTTCATAAAATGGCTGCTGAATTCCTCTCCCGCACTTGCGATCATGAAAATCAGCCTGTCCCCGAAATTATCAGATGCTGAAAGGCTAATGA TTCAGACAGAGTTGAATGGATTTGCTAGAGCATCGACCAGAGCACTAATCCAGATTGAGAACTGA
AA sequence Show only first row Show all	>Lus10026712 pacid=23176532 polypeptide=Lus10026712 locus=Lus10026712.g ID=Lus10026712.BGIv1.0 annot-version=v1.0 MKLVAAYLLAVLGGNTTPTADDLKSILASVGADADNEKIEFLLSQVKGRDSAEMIASGLEKLASVPSGGGSCGAVADSAAAPAGVSAPAAEAKKEEKVED KEESDGYLARGFNSIEQAKDLSPREVRRHMVLHNVCLRTQGHVTTILLMIVKSPNLQRLGITMQSIPGTSVSNISFHGPSEVELSRLKIVGVKNLKGTGH EMAFIKWLLNSSPALAIMKISLSPKLSDAERLMIQTELNGFARASTRALIQIEN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44590			60S acidic ribosomal protein f...		Lus10026712 [exp]	0	1
AT5G30490			unknown protein		Lus10017101 [exp]	2.2	0.8356
AT1G13330		AHP2	Arabidopsis Hop2 homolog (.1)		Lus10035033 [exp]	8.1	0.7872
AT1G03330			Small nuclear ribonucleoprotei...		Lus10000666 [exp]	8.5	0.8247
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10010376 [exp]	11.5	0.7668
AT1G63460		ATGPX8	glutathione peroxidase 8 (.1)		Lus10008023 [exp]	13.6	0.7951
AT2G37970		SOUL-1	SOUL heme-binding family prote...		Lus10035541 [exp]	16.3	0.7962
AT5G06350			ARM repeat superfamily protein...		Lus10004194 [exp]	26.7	0.7887
AT2G34930			disease resistance family prot...		Lus10016341 [exp]	29.7	0.7691
AT4G04190			unknown protein		Lus10020577 [exp]	31.2	0.7691
AT5G43600		ATAAH-2, UAH	ARABIDOPSIS THALIANA ALLANTOAT...		Lus10021221 [exp]	36.4	0.7489

Compare expression of checked genes

Lus10026712 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.