Plant FIBer expression Database

Lus10026715 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025501
[exp]
224 / 7e-75 ND /
Lus10025502
[exp]
79 / 5e-19 ND /
Lus10001300
[exp]
61 / 8e-11 AT2G14095 52 / 7e-08 unknown protein
Lus10012704
[exp]
50 / 1e-07 AT2G14095 54 / 5e-09 unknown protein
Lus10001299
[exp]
48 / 1e-06 AT2G14095 53 / 2e-08 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G101500
[exp]
42 / 0.0001 AT2G14095 55 / 5e-09 unknown protein
PFAM info
Representative CDS sequence
>Lus10026715 pacid=23176587 polypeptide=Lus10026715 locus=Lus10026715.g ID=Lus10026715.BGIv1.0 annot-version=v1.0
ATGTTTACTTCAGCAACTACTAGTTTTACTATTACAACTCCAGCTGTCCCAGCCTCCGGAGTCCTCCACCACCGTGTCGAACCTCTCCGACGACTGACGA
CCAAATGCTTACTCCCGGCGGGGAAAGTGTTTGGTGTTGTTGCTCCCACCCAACTGCACTCTTCTTCACGCGCTTCCAACACTGTCCGGAGGGTCGCCGG
GGTTGATCCGGTGACGATGGCTGACAGTACTTCTGCTTCTCTTCAGGCTGCCGCCGGGATCTCCCTTCCCTTTAGTCTCCCTGATATCGACTCCAACAAC
TGGCCGGTGTGGATGCTGGGCGCTGTAGCAACTTTCGTGATACCTTTGGCAACCGGCAAGCTGGGGCCTTTGGGGAAGCTATTTGATAAGTTTGACGCGG
CGGTGGACACGGCGCAAGCAGTGGCGGACATGGTGGATGACGTGGCAGAGAAAGTGGAGGAGGTGGCCGACGACATCGGAAACAGCTTGCCGGCGGGTGC
TCTCAAGGACGCCTTAGAGTATGTGGAAACTATGGCCGATGAGATTGAGAAAGCTGCTGAATATTCCGAAACTCTACTCAATAAGGTGGAAGAATTTGGA
GACCAAGCTGAAGAGTTTGTGGAATCAGCTATCTCCAAGAAACCTGCTACTACTGCTGCTGCCACGCCGGTTTCCCAACCGCTGCCCCAGGAAGTTCAAG
CTGAGATATAG
AA sequence
>Lus10026715 pacid=23176587 polypeptide=Lus10026715 locus=Lus10026715.g ID=Lus10026715.BGIv1.0 annot-version=v1.0
MFTSATTSFTITTPAVPASGVLHHRVEPLRRLTTKCLLPAGKVFGVVAPTQLHSSSRASNTVRRVAGVDPVTMADSTSASLQAAAGISLPFSLPDIDSNN
WPVWMLGAVATFVIPLATGKLGPLGKLFDKFDAAVDTAQAVADMVDDVAEKVEEVADDIGNSLPAGALKDALEYVETMADEIEKAAEYSETLLNKVEEFG
DQAEEFVESAISKKPATTAAATPVSQPLPQEVQAEI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10026715
[exp]
0 1
AT1G52140 unknown protein Lus10006040
[exp]
1.0 0.9508
AT4G23740 Leucine-rich repeat protein ki... Lus10039321
[exp]
2.0 0.9311
AT4G15560 AtCLA1, DXS, DX... 1-DEOXY-D-XYLULOSE 5-PHOSPHATE... Lus10015518
[exp]
2.2 0.9296
AT2G02061 Nucleotide-diphospho-sugar tra... Lus10031330
[exp]
3.5 0.9392
Lus10033509
[exp]
3.5 0.9286
Lus10005395
[exp]
3.9 0.9323
AT2G44480 BGLU17 beta glucosidase 17 (.1.2) Lus10019531
[exp]
5.2 0.9209
AT3G12760 unknown protein Lus10000875
[exp]
6.1 0.8943
AT1G20670 DNA-binding bromodomain-contai... Lus10022999
[exp]
6.2 0.9076
AT1G19360 RRA3 reduced residual arabinose 3, ... Lus10042340
[exp]
7.0 0.9220

Lus10026715 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.