Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43210 272 / 3e-85 Ubiquitin-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026717 [exp] 845 / 0 AT2G43210 338 / 8e-111 Ubiquitin-like superfamily protein (.1.2) Lus10025504 [exp] 704 / 0 AT2G43210 355 / 1e-117 Ubiquitin-like superfamily protein (.1.2) Lus10026747 [exp] 0 / 1 AT1G06710 1190 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G036600 [exp] 364 / 9e-121 AT2G43210 369 / 5e-122 Ubiquitin-like superfamily protein (.1.2) Potri.007G123800 [exp] 303 / 9e-98 AT2G43210 330 / 6e-108 Ubiquitin-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00789 [flax] [poplar] UBX UBX domain
Representative CDS sequence Show only first row Show all	>Lus10026718 pacid=23176545 polypeptide=Lus10026718 locus=Lus10026718.g ID=Lus10026718.BGIv1.0 annot-version=v1.0 ATGGAGAGTTGCATCTCTGAGCTTGCATACAAAGGGTCCATCACTCAAGCAATTCTCGAATCCAAAGCGCAGAAGAAGCTTTTCGTTGTTTATATTTCAG GCAACAATTCAGAGTCAGAGGAGTTGGAAAAATCAACATGGACTGATGTCAAGGTAGCAGAGACACTGTCAAAGTACTGCATTTTGTTGCATGTTCTTGA GGGAACTGAAGATGCTATAAACTTTTCAGCTATTTATCCACAAAAGTCGGTTCCTGCTATAGCAGTTATTGGGTATAATGGCGTTCAGCTTTGGCAAAGT GAAGGATCCATAAGTGCTGAGGTCCTGGTGTCCAGCCTAGAAAAGGCATATTTGAGTCTTCATATTCAGGAAACAACTACTAACGTCTTGACTGCTGCGG TTGCTAATAATAAATCTGAGCCACCTGCTTCTGGGTCTTCCAATGGTGTCTCACTTGCCCACGAAAGTTCTTCAGCTGTTGCTTCTTCATCTCCAGCTGA GAGAAATGTGCAATCCACCGAGGTTACACATCATAGTGTTTCTAGGACAATAGAGGACAATAAATCTCATGACACTAAAACTAAGGATGATGAAAATGTA TCTCCAAAGCCCTGCAGTATCGAAAAGTCACTGAGAGTTGTGGATGAACAATCCCAACCTTCCGCTGGAAGGACTGAGGTCATGTGTAATCCCTCTAAGA CGAACTCGGAAACAGTTGATCATGTGTCGTCAGATGCAGAAATCAATCATGATCTCCAAGAAGATATCATTGATAACAATTCATGCATCTGTGAACAAGA CAAAAATTCTGAATCCCTAAATGACAGTAAGAGCGATGTGTCCAAAGTTACTGTGTCAAATGATGTTCATTTGAACATCAAGCTTCTCAATGGAACTAGC ATAAAGGAGAAATTTTTGGTGTCAAGTACATTGAGAATGGTCAAAGACTTTGTGGATAACAACCTAGAGACTGACAATGTTTCGTACTATCTTGCCATTC CTTATCCTCGCAAGGTGTTTGGTGAACAAGATTTAGACAGATCCTTATCAGACTTGGGTCTTTCTAGTAGACAAGCATTGATAGTGGTTCCTCGTCAAGG CAGTGTAAGTTACAATAAACAAGATTCTTCCGCCTCTGCTCAAGGTCCTGCTGCAAGCCTTGGAGGATATTTCGGATATGTCAGGAGAGCCATGTCTTTA ATCAATCCTCTTTCGTATGTTGGCGGGTCGAGTTCATCGACTTCAGAACCTGTTCAAAGTAACATGCGGCAGTACAGTCCGAATCCGGCACCACACCAAG AGGATCAAGCAGCTGCCGCTAACAATGTCAGGAGGTTGAGGCAACCAACAACAACCTTTGGTTCTGGAAACAACATTCATACTCTGAAACACGACGAAGA TGATGATGGTGTTGATGGAAGAAACGCCTACTGGAACGGCAATTCCACACAATTCGGTGGCAGCAACGACAATGACGCAAAGTTGTAA
AA sequence Show only first row Show all	>Lus10026718 pacid=23176545 polypeptide=Lus10026718 locus=Lus10026718.g ID=Lus10026718.BGIv1.0 annot-version=v1.0 MESCISELAYKGSITQAILESKAQKKLFVVYISGNNSESEELEKSTWTDVKVAETLSKYCILLHVLEGTEDAINFSAIYPQKSVPAIAVIGYNGVQLWQS EGSISAEVLVSSLEKAYLSLHIQETTTNVLTAAVANNKSEPPASGSSNGVSLAHESSSAVASSSPAERNVQSTEVTHHSVSRTIEDNKSHDTKTKDDENV SPKPCSIEKSLRVVDEQSQPSAGRTEVMCNPSKTNSETVDHVSSDAEINHDLQEDIIDNNSCICEQDKNSESLNDSKSDVSKVTVSNDVHLNIKLLNGTS IKEKFLVSSTLRMVKDFVDNNLETDNVSYYLAIPYPRKVFGEQDLDRSLSDLGLSSRQALIVVPRQGSVSYNKQDSSASAQGPAASLGGYFGYVRRAMSL INPLSYVGGSSSSTSEPVQSNMRQYSPNPAPHQEDQAAAANNVRRLRQPTTTFGSGNNIHTLKHDEDDDGVDGRNAYWNGNSTQFGGSNDNDAKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43210			Ubiquitin-like superfamily pro...		Lus10026718 [exp]	0	1
AT2G43210			Ubiquitin-like superfamily pro...		Lus10026717 [exp]	1.0	0.9658
AT4G33540			metallo-beta-lactamase family ...		Lus10027583 [exp]	3.3	0.8936
AT3G08840			D-alanine--D-alanine ligase fa...		Lus10012211 [exp]	5.5	0.9118
AT4G34140			D111/G-patch domain-containing...		Lus10039947 [exp]	7.2	0.8926
AT1G18720			Protein of unknown function (D...		Lus10036771 [exp]	8.9	0.8844
AT1G02860		BAH1, NLA	nitrogen limitation adaptation...		Lus10030375 [exp]	10.6	0.9165
AT5G03560			Tetratricopeptide repeat (TPR)...		Lus10027932 [exp]	11.0	0.9089
AT5G26610			D111/G-patch domain-containing...		Lus10001513 [exp]	12.0	0.8953
AT3G11290			unknown protein		Lus10002039 [exp]	12.5	0.8926
AT4G26100		CKL1, CK1	casein kinase 1 (.1)		Lus10021580 [exp]	13.0	0.8966

Compare expression of checked genes

Lus10026718 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.