Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025507 [exp] 108 / 5e-30 AT3G18990 91 / 1e-21 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10026724 [exp] 95 / 6e-25 AT4G33280 42 / 2e-04 AP2/B3-like transcriptional factor family protein (.1) Lus10025534 [exp] 91 / 2e-23 AT3G18990 81 / 2e-18 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025505 [exp] 71 / 5e-16 ND 41 / 5e-04 Lus10009734 [exp] 52 / 5e-09 AT5G16630 49 / 1e-06 DNA repair protein Rad4 family (.1.2) Lus10025533 [exp] 46 / 1e-06 AT1G06710 980 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009688 [exp] 39 / 0.0002 AT3G18990 113 / 2e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026719 pacid=23176584 polypeptide=Lus10026719 locus=Lus10026719.g ID=Lus10026719.BGIv1.0 annot-version=v1.0 ATGGACAGCTTAAGTGTTGATGCCGCTGCTGCAAATGAGAAAGGAAAATCTCCGATGGTTGATGATTCTGCAGGCTTGGATGATGGTTCTGAAAATCGAT TGGGATCAGCACATCCCTCTTTCGAGATCAAAATCCAGCGAAGTTATCTGAATACTGACCGGCAAGGATGTATACCATTAACTTTTACGAGGCAACACCC GTTCTTGAGAGATGTGAAGAAGGTGAAGCTAGAGGTAGGGGAGAAGGTTTGGCCAATAACGACCTCGCTCGATCGTGGCATTTATGTCAGGCTCGGCGGT GGCTGGAGTGGGTTCGCGAAAGAAAACTCGCTCGAACTCTAA
AA sequence Show only first row Show all	>Lus10026719 pacid=23176584 polypeptide=Lus10026719 locus=Lus10026719.g ID=Lus10026719.BGIv1.0 annot-version=v1.0 MDSLSVDAAAANEKGKSPMVDDSAGLDDGSENRLGSAHPSFEIKIQRSYLNTDRQGCIPLTFTRQHPFLRDVKKVKLEVGEKVWPITTSLDRGIYVRLGG GWSGFAKENSLEL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10026719 [exp]	0	1
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10026720 [exp]	1.0	0.8193
					Lus10041155 [exp]	14.1	0.7544
AT1G63440		HMA5	heavy metal atpase 5 (.1)		Lus10008309 [exp]	18.6	0.8153
AT1G51940			protein kinase family protein ...		Lus10026689 [exp]	20.0	0.6970
AT3G52190		AtPHF1, PHF1	phosphate transporter traffic ...		Lus10028830 [exp]	23.9	0.7878
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Lus10026625 [exp]	24.6	0.7800
AT1G21240		WAK3	wall associated kinase 3 (.1)		Lus10013387 [exp]	26.2	0.7900
AT3G22640		PAP85	cupin family protein (.1)		Lus10022072 [exp]	39.2	0.7796
					Lus10022031 [exp]	42.1	0.7734
AT1G10390			Nucleoporin autopeptidase (.1....		Lus10033256 [exp]	44.2	0.7768

Compare expression of checked genes

Lus10026719 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.