Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18990 45 / 6e-07 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025534 [exp] 141 / 2e-43 AT3G18990 81 / 2e-18 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025507 [exp] 124 / 2e-36 AT3G18990 91 / 1e-21 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025506 [exp] 102 / 1e-29 AT3G18990 79 / 4e-19 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10036045 [exp] 77 / 3e-18 AT3G18990 110 / 2e-27 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10009688 [exp] 76 / 1e-17 AT3G18990 113 / 2e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10016777 [exp] 60 / 5e-12 AT3G18990 115 / 3e-29 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10026724 [exp] 57 / 5e-11 AT4G33280 42 / 2e-04 AP2/B3-like transcriptional factor family protein (.1) Lus10025505 [exp] 54 / 7e-10 ND 41 / 5e-04 Lus10012039 [exp] 48 / 8e-08 AT3G18990 74 / 4e-15 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191500 [exp] 46 / 3e-07 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G230100 [exp] 40 / 5e-05 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 39 / 0.0001 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026720 pacid=23176623 polypeptide=Lus10026720 locus=Lus10026720.g ID=Lus10026720.BGIv1.0 annot-version=v1.0 ATGGCTTCATCTTCAAGCCAGGCTAGGCGTGGGGAGGAAGTTATCCGTTTCATCAAGATCATCTTGGAATCCACCATCCTTGACAAATGGTGCCTAAAGA AGTTTTTCAGTGAGTTTGGACAGCAGCTGGTTGGATGTAATGCTGCTACTTTGGAGGTTCCCAGTGGAGACAAATGGAAAGTTGGGTTGGAGACGGATGG GAAAGGATTCATTTGGTTATGCAACGATGGATGGCAGAAATTCGCTAAGTTCTACTCGTGA
AA sequence Show only first row Show all	>Lus10026720 pacid=23176623 polypeptide=Lus10026720 locus=Lus10026720.g ID=Lus10026720.BGIv1.0 annot-version=v1.0 MASSSSQARRGEEVIRFIKIILESTILDKWCLKKFFSEFGQQLVGCNAATLEVPSGDKWKVGLETDGKGFIWLCNDGWQKFAKFYS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10026720 [exp]	0	1
					Lus10026719 [exp]	1.0	0.8193
AT3G21510		ATHP3, AHP1	histidine-containing phosphotr...		Lus10000926 [exp]	47.4	0.7447
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10000748 [exp]	62.9	0.6589
AT2G28380		DRB2	dsRNA-binding protein 2 (.1)		Lus10003362 [exp]	75.3	0.7069
AT2G17120		LYM2	lysm domain GPI-anchored prote...		Lus10014442 [exp]	99.3	0.6709
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Lus10025774 [exp]	106.5	0.7145
AT5G41620			unknown protein		Lus10028746 [exp]	121.5	0.6693
AT5G58610			PHD finger transcription facto...		Lus10025386 [exp]	150.6	0.6930
AT1G76340		GONST3	golgi nucleotide sugar transpo...		Lus10034672 [exp]	153.9	0.6919
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10004043 [exp]	165.6	0.6797

Compare expression of checked genes

Lus10026720 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.