Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45230 45 / 3e-06 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G36150 44 / 6e-06 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G45250 42 / 4e-05 RPS4 RESISTANT TO P. SYRINGAE 4, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G12010 42 / 4e-05 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G45200 41 / 0.0001 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G63860 40 / 0.0002 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27180 40 / 0.0003 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G19510 39 / 0.0006 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT5G44870 39 / 0.0007 TTR1, LAZ5 tolerance to Tobacco ringspot virus 1, LAZARUS 5, Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008526 [exp] 150 / 8e-43 AT5G36930 361 / 5e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10002248 [exp] 139 / 4e-40 AT5G40060 42 / 0.001 Disease resistance protein (NBS-LRR class) family (.1) Lus10008525 [exp] 134 / 2e-39 AT3G44670 52 / 4e-07 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10004719 [exp] 139 / 8e-39 AT5G36930 384 / 3e-113 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10000738 [exp] 137 / 2e-38 AT5G36930 191 / 7e-50 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10008516 [exp] 135 / 5e-38 AT4G27220 59 / 1e-08 NB-ARC domain-containing disease resistance protein (.1) Lus10005179 [exp] 116 / 6e-32 AT3G44670 44 / 2e-04 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10002249 [exp] 117 / 3e-31 AT5G36930 286 / 2e-80 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10008519 [exp] 110 / 8e-29 AT1G27180 344 / 2e-98 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G127200 [exp] 44 / 2e-05 AT3G14470 404 / 4e-123 NB-ARC domain-containing disease resistance protein (.1) Potri.005G030318 [exp] 40 / 0.0003 AT1G69550 673 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.017G128000 [exp] 39 / 0.0004 AT3G14470 435 / 6e-135 NB-ARC domain-containing disease resistance protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026723 pacid=23176626 polypeptide=Lus10026723 locus=Lus10026723.g ID=Lus10026723.BGIv1.0 annot-version=v1.0 ATGGAGGTCAAAATCACTAAGGAGGAGGATCCGGTTGTGATTGGATCCCTGGAAGAGTTGGTTGATTTGGTGTTAAAGTTAGACGATACATGTTCCAGCT TACAGAGGATAGCTTCCTTGTCGAACCTGCAAAAGTTGTGGACACTCGAAGTGAAGGCGTCGAGTTTGCGGGAGATTGAAGGGCTTGCAGAGTTGAAGTC TTTGCGAAAGTTGATTTTAGAGGGTTGCACGTCGTTGGAGAGACTATGGCCTGATGATCAACTACGTCTGGAGAAACTGGAGGAGCTCAACATCCGAGGT TGCAAAAGCTTGAGTGTTGATCATCTCACTGCACTCGAGACCAGTCTACGGCCTTATGTGACGATAACATGGCCCGACCACTACTTCAGACCAACATTCT GA
AA sequence Show only first row Show all	>Lus10026723 pacid=23176626 polypeptide=Lus10026723 locus=Lus10026723.g ID=Lus10026723.BGIv1.0 annot-version=v1.0 MEVKITKEEDPVVIGSLEELVDLVLKLDDTCSSLQRIASLSNLQKLWTLEVKASSLREIEGLAELKSLRKLILEGCTSLERLWPDDQLRLEKLEELNIRG CKSLSVDHLTALETSLRPYVTITWPDHYFRPTF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36150			Disease resistance protein (TI...		Lus10026723 [exp]	0	1
AT1G11920			Pectin lyase-like superfamily ...		Lus10018429 [exp]	15.9	0.5970
AT1G19835			Plant protein of unknown funct...		Lus10033813 [exp]	38.5	0.5168
					Lus10011367 [exp]	43.4	0.5318
					Lus10009729 [exp]	46.9	0.5622
AT1G02816			Protein of unknown function, D...		Lus10018818 [exp]	53.6	0.5510
AT3G06030		AtANP3, MAPKKK1...	NPK1-related protein kinase 3 ...		Lus10031963 [exp]	56.7	0.5308
					Lus10022112 [exp]	69.7	0.5142
AT3G28030		UVR1, UVH3	UV REPAIR DEFECTIVE 1, ULTRAVI...		Lus10039482 [exp]	88.2	0.5417
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10020706 [exp]	153.5	0.5024
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Lus10029167 [exp]	187.4	0.4877

Compare expression of checked genes

Lus10026723 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.