Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49480 42 / 0.0002 B3 REM19, RTV1 related to vernalization1 1 (.1) AT4G33280 42 / 0.0003 B3 REM16 AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025507 [exp] 341 / 1e-118 AT3G18990 91 / 1e-21 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025534 [exp] 122 / 1e-33 AT3G18990 81 / 2e-18 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10026719 [exp] 114 / 5e-32 ND 35 / 0.004 Lus10025533 [exp] 102 / 3e-24 AT1G06710 980 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025505 [exp] 93 / 1e-22 ND 41 / 5e-04 Lus10036045 [exp] 91 / 5e-21 AT3G18990 110 / 2e-27 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10009688 [exp] 89 / 2e-20 AT3G18990 113 / 2e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025506 [exp] 69 / 1e-14 AT3G18990 79 / 4e-19 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10009214 [exp] 64 / 4e-13 AT1G49480 40 / 6e-05 related to vernalization1 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G230100 [exp] 59 / 6e-10 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.010G191500 [exp] 49 / 1e-06 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 49 / 2e-06 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.004G147000 [exp] 47 / 8e-06 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10026724 pacid=23176646 polypeptide=Lus10026724 locus=Lus10026724.g ID=Lus10026724.BGIv1.0 annot-version=v1.0 ATGGCAAGCACTATTTCATTTCCTTGTATGCAGAGGATACCTAGGAAGTTCATCAGTACTGAGTTTGGACAGCAACTGTTGGGATGTGATGCTGCCACTT TGGAGGTGAGGTTCCCATTGGAGACAAATGGGAAGTTGGGTTGGAGAGGGATAGACAAGGGTTCGTTTGGTTCTACAACGATGCATGGGGGAGATTTGCA AAGTTCTACTCTTTGGACTATGGCCACTTCTAGCTTGTCCATAGTTACATGCGACATATCTGCCACTGAGATTGTGTACCCAACATTGAGCAATGTTGAC CGAGTTGTTGAAATCGAACGTGATGACTCCCTTTCTCTGGAGATCGTAGGCGAGGTTGATGATACTGCTGCAAATGAGAAAGGCAAATCTCCTATAGTTG ATGATTCTGCAGAAACAATAATCAATGAAGAGAAAGAAGGTACGAACTTGGATGATGATGCTTCTGGAAATCTATTCGGATCGGGACATACCTTGTTCGA GATCAAAATCAAAGCATCTCATCTGTGTTCTAGGCAGCAAAGACGTATACCATTAAGTTTTACGATGGAACACTCATTTATGAGAGAAGTCGAGCAGGTG AAAATGGAGGTAGGGGACAACGTTTGGCCAGTAAGGGTTCGTCTCGCATGCAACATGTATGTCCTAATTCCCGCTGGCTGGATTAGGTTTGCGGAAGATA ACTCGTTGAAACTCGGAGATGTTTGTGTCTTCAAGGTGATGGCAACATCCCCTGAGGTTCGAACCATCATTAGAGGTGTCTGA
AA sequence Show only first row Show all	>Lus10026724 pacid=23176646 polypeptide=Lus10026724 locus=Lus10026724.g ID=Lus10026724.BGIv1.0 annot-version=v1.0 MASTISFPCMQRIPRKFISTEFGQQLLGCDAATLEVRFPLETNGKLGWRGIDKGSFGSTTMHGGDLQSSTLWTMATSSLSIVTCDISATEIVYPTLSNVD RVVEIERDDSLSLEIVGEVDDTAANEKGKSPIVDDSAETIINEEKEGTNLDDDASGNLFGSGHTLFEIKIKASHLCSRQQRRIPLSFTMEHSFMREVEQV KMEVGDNVWPVRVRLACNMYVLIPAGWIRFAEDNSLKLGDVCVFKVMATSPEVRTIIRGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10026724 [exp]	0	1
AT5G19360		CPK34	calcium-dependent protein kina...		Lus10036050 [exp]	13.4	0.6598
AT1G61600			Protein of unknown function (D...		Lus10035379 [exp]	16.6	0.7654
AT2G18540			RmlC-like cupins superfamily p...		Lus10041722 [exp]	37.7	0.6964
AT5G59845			Gibberellin-regulated family p...		Lus10018708 [exp]	166.2	0.5811
AT2G15130			Plant basic secretory protein ...		Lus10013864 [exp]	253.7	0.5839

Compare expression of checked genes

Lus10026724 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.