Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05830 1253 / 0 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) AT2G31650 1209 / 0 SDG27, TRX1, ATX1 SET DOMAIN PROTEIN 27, homologue of trithorax (.1) AT5G53430 246 / 4e-67 SET29, ATX5, SDG29 SET domain group 29 (.1) AT3G61740 241 / 6e-66 SDG14, ATX3 SET domain protein 14 (.1.2) AT4G27910 240 / 2e-65 SDG16, ATX4 SET domain protein 16 (.1) AT5G42400 140 / 2e-33 SDG25, ATXR7 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) AT3G14740 102 / 4e-23 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT1G77800 100 / 5e-21 PHD finger family protein (.1.2) AT4G02020 93 / 6e-19 SDG10, SWINGER, SWN, EZA1 SWINGER, SET DOMAIN-CONTAINING PROTEIN 10, SET domain-containing protein (.1) AT3G59960 90 / 6e-19 SDG24, ASHH4 SET DOMAIN PROTEIN 24, histone-lysine N-methyltransferase ASHH4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025508 [exp] 2103 / 0 AT1G05830 1256 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10012626 [exp] 219 / 1e-58 AT3G61740 1077 / 0.0 SET domain protein 14 (.1.2) Lus10010121 [exp] 204 / 2e-53 AT3G61740 1008 / 0.0 SET domain protein 14 (.1.2) Lus10005007 [exp] 174 / 4e-44 AT4G27910 611 / 0.0 SET domain protein 16 (.1) Lus10004012 [exp] 164 / 8e-42 AT3G61740 424 / 2e-136 SET domain protein 14 (.1.2) Lus10025172 [exp] 154 / 2e-37 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10016051 [exp] 152 / 4e-37 AT5G42400 362 / 9e-104 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10030262 [exp] 126 / 4e-29 AT3G61740 742 / 0.0 SET domain protein 14 (.1.2) Lus10024777 [exp] 109 / 3e-24 AT1G77800 385 / 7e-120 PHD finger family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G232800 [exp] 1541 / 0 AT1G05830 1261 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.014G146300 [exp] 1514 / 0 AT1G05830 1273 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.002G170600 [exp] 239 / 8e-65 AT3G61740 1140 / 0.0 SET domain protein 14 (.1.2) Potri.014G098400 [exp] 236 / 8e-64 AT3G61740 1120 / 0.0 SET domain protein 14 (.1.2) Potri.015G014300 [exp] 226 / 2e-60 AT5G53430 1322 / 0.0 SET domain group 29 (.1) Potri.005G260100 [exp] 158 / 7e-39 AT5G42400 397 / 5e-117 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.002G001000 [exp] 157 / 1e-38 AT5G42400 385 / 3e-112 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.018G023000 [exp] 157 / 2e-38 AT1G05830 160 / 2e-39 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.012G013900 [exp] 139 / 3e-33 AT5G53430 1423 / 0.0 SET domain group 29 (.1) Potri.005G171800 [exp] 113 / 5e-25 AT1G77800 522 / 2e-160 PHD finger family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [flax] [poplar] Tudor PF00855 [flax] [poplar] PWWP PWWP domain CL0049 [flax] [poplar] PF05964 [flax] [poplar] FYRN F/Y-rich N-terminus CL0049 [flax] [poplar] PF05965 [flax] [poplar] FYRC F/Y rich C-terminus CL0049 [flax] [poplar] PF00856 [flax] [poplar] SET SET domain
Representative CDS sequence Show only first row Show all	>Lus10026725 pacid=23176581 polypeptide=Lus10026725 locus=Lus10026725.g ID=Lus10026725.BGIv1.0 annot-version=v1.0 ATGGCATTGGCCGAAAAGCCGAGCGAAGACAAGATTCTGAATAAGCCGATTGTCGAAGACGACGATATCAATTTGGACAACCACACAGACGCCCCTGTTC GCTACGTGTCGCTTGACCGGGTCTACACCGCCGCGTCGCTCTGTGTCAGCTCCGGCGGCTCTAATGCCATGTCTAAGAAGGTCAAAGCACGGAGGCTCGT CTCTGATGCCGATCCGTGCTCCAATCGTCCTCCTATAATCAATGTGTATTCTCGCAAGTGTAGGAAGTCTCGCCATTCTTCGGGTAAGCAGTCCAATGGC GAAGTGGCGAGGACTGATGAGATTGTACTTGGAGTTAAAGTGAATGAGGAAAATGAAGAGATTGAGGACTCTGTCGATGATGATGCGGAGAGGAAGGCTA AGAGGAGGAGGATTGGGAGCGGTGAGTTGGTTAAATTGGGGGTTGATTCCAGGGTTCTGCAAGGGTTTGATCTCCCCCGGTTGAGGGACTGCCGGAATCA TCAAGTGAACGGTAGCGATAATGTACGGAAGAGGAAAAAGAAAAGTGGTTCTGGGCACGACTCCGACAAGGTTTCTTCACTCCCAGCTGATACTAAGAGA TGGGCCAGGTTAAGCATTGATGGTGTTGATCCCAAAACATTCATTGGGCTACAATGCAAGGCAAGTGTCTCATTCTGCAATTGTTCAGACTGCACAGTGT ATTGGCCTTTGGATGTTGACTGGTATTCTGGGCGTATTGTTGGCTACAATTCAGAGACGAATCAACATCAAATACACTATGAAGATGGAGATATTGAGAA TCTTCTACTTCCAAGAGAAAAGGTTAAATTCTTTATCTCTCGGGAAGAGATGGAGCAACTGAACTTGTGTACGAGAAGTACCAATGGAGGGAGCCAGGAA TATGAGGAAATGGTTGTGTTGGCTGCCAGTTTGGATGACTGCCAAGACCTTGAACCTGGAGACCTCATATGGGCTAAACTAACTGGTCATGCTATTTGGC CAGCTATTGTTGTTGAAGAATCAGTTATTGGTAGCCGTAAAGGTTTAAAGAAGAACTTTGAAGCAAGATTAACCCCTGTGCAATTTTTTGGCACCCATGA TTTTGCTAGAATTAAACCAAACCAGGTAATCTCATTTCTCAAAGGACTTCTTTCCTCCTTCCACTTGAAGTGCAAGCAACCTCGTTTCACTCGTAGCTTG GAAGAAGCAAAAACGTACTTGAGTGAACAAAAGCTTCCTACAAGAATGGTACAGCTACGAAAGAGCATGACTAATGATAGTTGTGAACATGCAAGTAGTG ATGATGGAAGTACTGATCCTGGCAGAGATTGTCTGGGAGATGAAGAGATACAAAGGATATTGAGGAGCCTTCACACTTCTCCATATGTAATTGGGGATCT GCAGATCATATGCCTTGGAAAGATTGTGAAGGATTCAGAATATTTTCAGGACGAAAAATCTATCTGGCCTGAGGGATATACTGCCCTGCGGAAGTTCACT TCAGCAGCAGATCCAGGTGCTTCATCCATTTATAAGATGCAAGTGCTGAGAGATTCTGAATCAAAGATTCGGCCCCTATTTAGAGTTACACTTGACAATG GAGACCAGATTGAAGGGTCAACTCCATCTGCTTGCTGGAATAAAATATACGGAAGAATCAAGAAACTGGAAGATGCATCTGGTGATCTGAACAGTGAGTA TCAAGTAGAAAGGACACATCAGTCTGGCTCTCACATGTTTGGTTTCTCCAACCCTGAAGTCATAAAACTGATAAAGGGATTATCAAAGTCCAGAGTCACC TCTGGAATGTCTACAATCAAGTCACTGTCTGACAGATATCAAGATTTTCCTGCTGGTTACAGACCAGTTCGTGTTGACTGGAAGGACCTTGATAAGTGCA ATGTCTGCCATATGGATGAGGAATATGAAAACAATCTCTTCCTGCAGTGTGATAAGTGTAGAATGATGGTGCATGCTAGGTGCTATGGGGAATTAGAACC TGTTGATGGTGTACTATGGTTATGTAACTTGTGCCGTCCTGGAGCTCCCGAGTTCCCACCCCCTTGCTGTCTTTGTCCTGTTATCGGTGGTGCTATGAAG CCTACAACTGACGGGCAATGGGCTCATCTTGCGTGTGCCATATGGATACCAGAAACTTGCTTGTTGGACGTTAAGAGAATGGAGCCCATTGATGGTCTAA ATAGAATTAATAAGGACCGCTGGAAACTTCTCTGTAGTATATGTGGAGTAGCTTATGGAGCTTGTATTCAGTGTTCAAATCATAATTGCTGTGCAGCATA TCATCCTCTTTGTGCACGTGCTGCTGGCCTTTGTGTTGAGCTAGAGGACGAGGAAAGACTGTATCTGCTTTCTATGGAGGAAGATGATGAAGAGCAATGC ATTCGTTTACTTTCCTTCTGCAAAAGGCATAAACAACCATCTAATGATCGTCCAATCGATGAGCGTATAAGTCGAGTTTCTCGTCGTTGTTCTGACTATG TTCCACCTTGTAATCAATCTGGTTGTGCTCGTACAGAGCCTTACAATCATTCTGGACGTAGAGGACGCAAAGAACCTGAAGTACTTGCTGCTGCATCCTC AAAGCGTTTGTTTGTAGAAAATCAGCCTTATCTTGTGGGTGGTTACTGTCGAAGTGAATCATCTGGCATATCACTTTCTTCAAGTGGTGTTGTTAGCACA AGATTCACCTCTAGCCTACAAAGGCTGAAAGCCTCTAACCTTTCTGTTCCAAGTAATATCCTTTCTATGGCAGAGAAGTATAATTACATGAAGCAGACTT TTCGAAAGAGACTGGCTTTTGGCAAATCAGCAATTCATGGATTTGGCATCTTTACAAAACACCCGCATAGGGCTGGCGACATGATGATTGAATACACTGG GGAACTCGTTAGACCTTCTATAGCTGATAGGAGAGAAGGTCTTATATATAATTCATTGGTGGGTGCTGGTACTTACATGTTTCGAATTGATAATGAACGA GTTATTGATGCCACAAGAGCCGGAAGCATTGCTCATCTGATTAACCATTCATGTGAGCCCAACTGCTATTCCAGAGTCATAAGTGTTAATGGCGATGAGC ATATCATTATCTATGCAAAGCGAGATATCAAAAGATGGGAAGAACTTACTTATGATTATAGGTTTTTCTCAATTGATGAACAACTACCATGTTATTGTGG TTTCCCTCGATGCCGTGGTGTGGTGAATGACATTGAAGCTGAGGAGCAATTGTCCAAGCAGTATGCCCCTAGCATTGAGTTGATAGACTGCATAGGAGAG TAA
AA sequence Show only first row Show all	>Lus10026725 pacid=23176581 polypeptide=Lus10026725 locus=Lus10026725.g ID=Lus10026725.BGIv1.0 annot-version=v1.0 MALAEKPSEDKILNKPIVEDDDINLDNHTDAPVRYVSLDRVYTAASLCVSSGGSNAMSKKVKARRLVSDADPCSNRPPIINVYSRKCRKSRHSSGKQSNG EVARTDEIVLGVKVNEENEEIEDSVDDDAERKAKRRRIGSGELVKLGVDSRVLQGFDLPRLRDCRNHQVNGSDNVRKRKKKSGSGHDSDKVSSLPADTKR WARLSIDGVDPKTFIGLQCKASVSFCNCSDCTVYWPLDVDWYSGRIVGYNSETNQHQIHYEDGDIENLLLPREKVKFFISREEMEQLNLCTRSTNGGSQE YEEMVVLAASLDDCQDLEPGDLIWAKLTGHAIWPAIVVEESVIGSRKGLKKNFEARLTPVQFFGTHDFARIKPNQVISFLKGLLSSFHLKCKQPRFTRSL EEAKTYLSEQKLPTRMVQLRKSMTNDSCEHASSDDGSTDPGRDCLGDEEIQRILRSLHTSPYVIGDLQIICLGKIVKDSEYFQDEKSIWPEGYTALRKFT SAADPGASSIYKMQVLRDSESKIRPLFRVTLDNGDQIEGSTPSACWNKIYGRIKKLEDASGDLNSEYQVERTHQSGSHMFGFSNPEVIKLIKGLSKSRVT SGMSTIKSLSDRYQDFPAGYRPVRVDWKDLDKCNVCHMDEEYENNLFLQCDKCRMMVHARCYGELEPVDGVLWLCNLCRPGAPEFPPPCCLCPVIGGAMK PTTDGQWAHLACAIWIPETCLLDVKRMEPIDGLNRINKDRWKLLCSICGVAYGACIQCSNHNCCAAYHPLCARAAGLCVELEDEERLYLLSMEEDDEEQC IRLLSFCKRHKQPSNDRPIDERISRVSRRCSDYVPPCNQSGCARTEPYNHSGRRGRKEPEVLAAASSKRLFVENQPYLVGGYCRSESSGISLSSSGVVST RFTSSLQRLKASNLSVPSNILSMAEKYNYMKQTFRKRLAFGKSAIHGFGIFTKHPHRAGDMMIEYTGELVRPSIADRREGLIYNSLVGAGTYMFRIDNER VIDATRAGSIAHLINHSCEPNCYSRVISVNGDEHIIIYAKRDIKRWEELTYDYRFFSIDEQLPCYCGFPRCRGVVNDIEAEEQLSKQYAPSIELIDCIGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Lus10026725 [exp]	0	1
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Lus10025508 [exp]	3.7	0.9255
AT1G40087			Plant transposase (Ptta/En/Spm...		Lus10035798 [exp]	4.9	0.8886
AT1G67500		ATREV3	recovery protein 3 (.1.2)		Lus10029911 [exp]	5.7	0.8592
AT1G33410		NUP160, SAR1, A...	ARABIDOPSIS NUCLEOPORIN 160, S...		Lus10038728 [exp]	5.7	0.9224
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Lus10038248 [exp]	6.9	0.8995
AT5G01630		BRCA2(V), ATBRC...	BRCA2-like B (.1)		Lus10000317 [exp]	7.7	0.8966
AT5G60040		NRPC1	nuclear RNA polymerase C1 (.1....		Lus10015971 [exp]	8.9	0.8939
AT3G04820			Pseudouridine synthase family ...		Lus10009188 [exp]	10.2	0.8859
AT5G38730			Tetratricopeptide repeat (TPR)...		Lus10032174 [exp]	13.8	0.8536
AT5G43100			Eukaryotic aspartyl protease f...		Lus10019309 [exp]	14.0	0.8626

Compare expression of checked genes

Lus10026725 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.