Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59020 1054 / 0 ARM repeat superfamily protein (.1.2) AT2G31660 1054 / 0 EMA1, URM9, SAD2 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) AT2G46520 84 / 1e-16 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) AT3G17340 75 / 1e-13 ARM repeat superfamily protein (.1.2) AT1G26170 68 / 2e-11 ARM repeat superfamily protein (.1) AT3G08960 49 / 1e-05 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025509 [exp] 1306 / 0 AT2G31660 1591 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) Lus10030241 [exp] 84 / 3e-16 AT2G46520 1438 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Lus10005969 [exp] 67 / 2e-12 AT2G46520 250 / 2e-77 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Lus10004753 [exp] 59 / 9e-09 AT3G08960 1432 / 0.0 ARM repeat superfamily protein (.1) Lus10007842 [exp] 59 / 2e-08 AT3G08960 1493 / 0.0 ARM repeat superfamily protein (.1) Lus10030434 [exp] 50 / 4e-06 AT2G46520 449 / 6e-149 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G149600 [exp] 1178 / 0 AT2G31660 1543 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) Potri.002G232600 [exp] 1169 / 0 AT2G31660 1499 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) Potri.014G100000 [exp] 94 / 2e-19 AT2G46520 1464 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Potri.002G172700 [exp] 92 / 8e-19 AT2G46520 1421 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Potri.008G109300 [exp] 77 / 3e-14 AT1G26170 1339 / 0.0 ARM repeat superfamily protein (.1) Potri.T108626 [exp] 75 / 1e-13 AT1G26170 1345 / 0.0 ARM repeat superfamily protein (.1) Potri.010G152700 [exp] 64 / 4e-10 AT3G17340 1051 / 0.0 ARM repeat superfamily protein (.1.2) Potri.016G119900 [exp] 59 / 8e-09 AT3G08960 1547 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF08506 [flax] [poplar] Cse1 Cse1 CL0020 [flax] [poplar] TPR PF03810 [flax] [poplar] IBN_N Importin-beta N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10026726 pacid=23176594 polypeptide=Lus10026726 locus=Lus10026726.g ID=Lus10026726.BGIv1.0 annot-version=v1.0 ATGGATCTCCCAAGCCTCGCCGCCATCCTTCAAGCTGCTCTCAGTCCTCATCCCGAACAGCGGAAGGCTGCTGAGCAGAGTCTTGAGCAGTTACAGTACA CGCCTCAGCACCTGCTGAGGCTGTTGCAGATAATCGTGGATAATAATTGTGACATGGCAGTGCGGCAATCCGCTACTATCCATTTTAAGAACTTCATTGC AAAGAATTGGTCTCCACTTGATTCTGACGAGCCTTCTAAGATTGCATCAAGTGATAAAGATGTTGTCAGGGATCACATCCTTGTTTTTGTTGCGCAAGTT CCCCCATTGCTGAGAGTACAATTGGGTGAGTGCCTCAAGACAATTATCCATGCTGATTACCCAGAGCAGTGGCCACGATTGTTGGACTGGATCAAGCACA ATCTACAGGATCAACAAGTATATGGAGCTTTATTTATCTTAAGGATGCTGTCAAGAAAATATGAGTTCAAGTCTGACGAGGAGAGGATGCCTGTTAACCG AATAGTTGATGAGACATTCCCACACCTTCTCAACATTTTTACTAGGCTTGTCCAGATTGCAAATCCATCCTTAGAAGTGGCAGATCTAATTAAGCTTATC TGTAAAATATTCTGGTCATCTATATACCTGGAGATCCCGAAACACCTGTATGATCCAAATATCTTCAATGGGTGGATGCTTCTTTTCTTAAATGTTTTAG AGAGGCCGGTTCCAGTAGAGGGGCAACCAATTGATCCCGAGCTTAGGAAGTCATGGGGATGGTGGAAAGTGAAAAAATGGACAGTCCACATTCTGAACCG TCTGTATACGAGGTTTGGAGATTTGAGGCTTCAGAACCCAGAAACCAAAGCTTTTGCGCAAATGTTTCAGAAGAACTATGCAGGAAAGATTTTGGAGTGT CATTTGAATTTGTTGAATGTGATTCGTGTTGGTGGGTATCTACCAGACAGAGTTACCAATCTGATTCTTCAATATCTAAGCAACAGCATCTCAAAGACTA CCATGTACAGTCTGCTACAACCCAGACTTGATGTTCTTCTCTTTGAAATAGTTTTCCCTTTGATGTGTTTCAATGACTATGATCAAAAGCTATGGGAGGA AGACCCACATGAATATGTGAGGAAGGGATATGATATAATTGAAGATCTGTATAGTCCAAGGACCGCTTCAATGGATTTTGTTAGCGAGTTGGTTAGAAAA CGGGGAAAGCAAAACATGCAGAAGTTTATCCAGTTCATTGTAGACGTTTTCAGAAGATATGATGAATGTCCAGTCGAGCACAAACCTTACCGTCAAAAGG ATGGTGCTTTGCTTGCTATTGGAGCACTATGTGATAAACTGAAACAAACTGAACCATACAAGTCTGAACTGGAGCGTATGCTAGTGCAACATGTATTCCC TGAGTTCATCAGCCCTTTTGGTCATCTTAGAGCAAAGGCGGCTTGGGTTGCTGGACAATATGCGCACATTAACTTTTCTGATCAGAATAACTTCCGAAAA GCTTTGAATAGTGTTGTATCTGGCTTGCGAGATCCAGAGCTTCCTGTTCGTGTGGATTCTGTTTTTGCATTGAGGAGTTTTATTGAAGCATGCAAAGATT TAAATGAGATCCGTCCTATACTTCCTCTCCTTCTTGATGAATTCTTCAAACTCATGAATGAAGTGGAGAATGAAGATTTAGTATTTACACTGGAGAGTAT TGTGGATAAATTTGGCGAGGAGATGGCACCATATGCTTTGGGCTTATGCCAAAATCTGGCAGCTGCTTTCTGGAGGTGTATGAACAGTGCTGAGGCCGAG GATGAAGCTGATGATCCTGGTGCTTTGGCAGCAGTAGGTTGTTTGCGTGCTATAAGTACAATTCTGGAGTCTGTGAGTAGGCTTCCTCACCTATTTGTTC AAATTGAACCGACTTTGCTTCCCATAATGCGGAGAATGTTGACAACTGATGGCAAGGTATACCTTCACTACCAACTGTTTGAAACTTTGAATTTACTGGA TTTGCTTCGAATGGTGGGGAGTGCTGAAAACTGGTGGCCAATTATTTCCCAGAGCAGGGTTTGCTTGTACTTTAAGAACGTATTGTGCTGTTATTATTTG GAGCTTCTTTTTGCTGGTCTGATATTTCAGTTAATTAAAACCTTTGGAGATTGCAACTGTTTCTGTTACGTTAAACCTACTCTAGCTCTGTTTGCGTGA
AA sequence Show only first row Show all	>Lus10026726 pacid=23176594 polypeptide=Lus10026726 locus=Lus10026726.g ID=Lus10026726.BGIv1.0 annot-version=v1.0 MDLPSLAAILQAALSPHPEQRKAAEQSLEQLQYTPQHLLRLLQIIVDNNCDMAVRQSATIHFKNFIAKNWSPLDSDEPSKIASSDKDVVRDHILVFVAQV PPLLRVQLGECLKTIIHADYPEQWPRLLDWIKHNLQDQQVYGALFILRMLSRKYEFKSDEERMPVNRIVDETFPHLLNIFTRLVQIANPSLEVADLIKLI CKIFWSSIYLEIPKHLYDPNIFNGWMLLFLNVLERPVPVEGQPIDPELRKSWGWWKVKKWTVHILNRLYTRFGDLRLQNPETKAFAQMFQKNYAGKILEC HLNLLNVIRVGGYLPDRVTNLILQYLSNSISKTTMYSLLQPRLDVLLFEIVFPLMCFNDYDQKLWEEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRK RGKQNMQKFIQFIVDVFRRYDECPVEHKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFISPFGHLRAKAAWVAGQYAHINFSDQNNFRK ALNSVVSGLRDPELPVRVDSVFALRSFIEACKDLNEIRPILPLLLDEFFKLMNEVENEDLVFTLESIVDKFGEEMAPYALGLCQNLAAAFWRCMNSAEAE DEADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGKVYLHYQLFETLNLLDLLRMVGSAENWWPIISQSRVCLYFKNVLCCYYL ELLFAGLIFQLIKTFGDCNCFCYVKPTLALFA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31660		EMA1, URM9, SAD...	UNARMED 9, SUPER SENSITIVE TO ...		Lus10026726 [exp]	0	1
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Lus10016597 [exp]	2.8	0.9520
AT2G07360			SH3 domain-containing protein ...		Lus10027587 [exp]	3.7	0.9530
AT5G11560			catalytics (.1)		Lus10011690 [exp]	4.2	0.9275
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Lus10013101 [exp]	4.9	0.9487
AT3G63460		EMB2221	transducin family protein / WD...		Lus10005323 [exp]	7.2	0.9380
AT3G63460		EMB2221	transducin family protein / WD...		Lus10019751 [exp]	8.9	0.9333
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Lus10039172 [exp]	10.6	0.9066
AT2G31660		EMA1, URM9, SAD...	UNARMED 9, SUPER SENSITIVE TO ...		Lus10025509 [exp]	11.4	0.8776
AT4G16340		SPK1	SPIKE1, guanyl-nucleotide exch...		Lus10013253 [exp]	11.8	0.9145
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Lus10024135 [exp]	12.7	0.9271

Compare expression of checked genes

Lus10026726 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.