Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31660 403 / 3e-132 EMA1, URM9, SAD2 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) AT3G59020 382 / 2e-124 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025509 [exp] 527 / 5e-180 AT2G31660 1591 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G149600 [exp] 461 / 9e-155 AT2G31660 1543 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) Potri.002G232600 [exp] 460 / 3e-154 AT2G31660 1499 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026727 pacid=23176536 polypeptide=Lus10026727 locus=Lus10026727.g ID=Lus10026727.BGIv1.0 annot-version=v1.0 ATGTGGACTCTATGGCCGTTGATGATGGAAGCACTGGCTGATTGGGCTATTGACTTCTTTCCAAATATTCTGGTTCCCTTGGATAATTACATTTCACGGG GGAATGCACATTTCCTGACTTGCAAAGAACCAGATTACCAACAGAGCCTATGGAACATGATCTCATCGACTATGGCGGATTCAAATTTGGAGGATGGTGA TATTGAACCTGCGCCAAAGCTTATTGAAGTGGTTTTCCAGAACTGTAAAGGACAAGTGGACCACTGGGTTGAGCCATATCTACGAGTCACTGTGGAAAGG TTGCGCCGAACTGAGAAGCCGTACTTAAAATGTCTTCTTGTGCAAGTGATTGCAGATGCGCTTTACTACAATGCAGCTTTGACGTTGAGTATTCTCACTA GGCTTGGAGTTGCTGCGGAAATTTTTGCCCTCTGGTTTCAGATGTTGCAACAAAAGAAAAAGACTGGTCAACCGGCTAATTTCAAGAGGGAGCACGACAA GAAAGTTTGTTGCCTGGGGTTGACATCATTGCTTGCACTTCCGGTGGATCAATTGCCCGGGGAGGCTTTGCAGCGAGTATTTACCGCTACACTTGGTCTT CTAGCAGCCTACAAAGAACAAGTTGCAGAAGCTGCTAAGGAAGAAGAAGCTGAGGATGATGATGATATGGATGGTTTCCAAACTGACGATGAAAATGAAG ATGCTGGTGGTTCCGACAAAGAAATGGGAGACGATGCTGAAGATGGCGATGAAGCTGATAGCCTCAAACTTCAGAAGTTAGCTGCACAGGCCAAGTCATT CCGCCCAAATGACGACGATGATGATGACTCTGACGATGACTACAGTGATGATGAAGAGTTGCAGTCACCAATTGACGAGGTCGACCCTTTTGTTTTCTTT ATGGATGCAGTCCAAGCAATGCAAGCAATTGACCCAGCAAGGTTCCAGAGCCTCAAACAGACACTTGATTTTCATCATCAGGCATTGGCAAATGGGGTCG CACAGCACGCTGATCAAAGGAGAATTGAGATTGAGAAAGAAAAAATAGAGAAGGCTGCAGCTGCTTCTGCCACTTAG
AA sequence Show only first row Show all	>Lus10026727 pacid=23176536 polypeptide=Lus10026727 locus=Lus10026727.g ID=Lus10026727.BGIv1.0 annot-version=v1.0 MWTLWPLMMEALADWAIDFFPNILVPLDNYISRGNAHFLTCKEPDYQQSLWNMISSTMADSNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRVTVER LRRTEKPYLKCLLVQVIADALYYNAALTLSILTRLGVAAEIFALWFQMLQQKKKTGQPANFKREHDKKVCCLGLTSLLALPVDQLPGEALQRVFTATLGL LAAYKEQVAEAAKEEEAEDDDDMDGFQTDDENEDAGGSDKEMGDDAEDGDEADSLKLQKLAAQAKSFRPNDDDDDDSDDDYSDDEELQSPIDEVDPFVFF MDAVQAMQAIDPARFQSLKQTLDFHHQALANGVAQHADQRRIEIEKEKIEKAAAASAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31660		EMA1, URM9, SAD...	UNARMED 9, SUPER SENSITIVE TO ...		Lus10026727 [exp]	0	1
AT2G31660		EMA1, URM9, SAD...	UNARMED 9, SUPER SENSITIVE TO ...		Lus10025509 [exp]	1.7	0.8764
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Lus10013763 [exp]	9.6	0.8620
AT3G13290		VCR	varicose-related (.1)		Lus10039116 [exp]	15.4	0.8232
AT2G38670		PECT1	phosphorylethanolamine cytidyl...		Lus10017147 [exp]	15.5	0.7614
AT5G11490			adaptin family protein (.1.2)		Lus10011675 [exp]	16.7	0.8176
AT4G27640			ARM repeat superfamily protein...		Lus10034202 [exp]	18.3	0.8041
AT3G58640			Mitogen activated protein kina...		Lus10017649 [exp]	20.3	0.8151
AT2G32850			Protein kinase superfamily pro...		Lus10003916 [exp]	23.9	0.7745
AT1G31660			unknown protein		Lus10032891 [exp]	27.3	0.8241
AT5G53480			ARM repeat superfamily protein...		Lus10008863 [exp]	31.9	0.8082

Compare expression of checked genes

Lus10026727 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.