Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59010 405 / 9e-140 PME61, PME35 pectin methylesterase 61 (.1) AT2G43050 384 / 7e-132 ATPMEPCRD, PME16 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G49220 334 / 3e-111 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G11580 329 / 1e-109 ATPMEPCRA methylesterase PCR A (.1) AT5G53370 326 / 3e-108 ATPMEPCRF pectin methylesterase PCR fragment F (.1) AT3G14310 320 / 5e-106 ATPME3 pectin methylesterase 3 (.1) AT2G45220 318 / 7e-106 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G53830 318 / 3e-105 ATPME2 pectin methylesterase 2 (.1) AT3G60730 307 / 8e-102 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02330 307 / 6e-101 AtPME41, ATPMEPCRB pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025510 [exp] 556 / 0 AT3G59010 547 / 0.0 pectin methylesterase 61 (.1) Lus10018103 [exp] 335 / 2e-111 AT3G49220 799 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10008203 [exp] 319 / 8e-106 AT4G02320 497 / 2e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10015877 [exp] 315 / 4e-105 AT3G60730 535 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10010309 [exp] 315 / 6e-105 AT1G02810 575 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038917 [exp] 315 / 1e-104 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10009110 [exp] 312 / 2e-103 AT1G23200 501 / 1e-173 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 309 / 4e-103 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10017665 [exp] 308 / 3e-102 AT5G20860 403 / 4e-136 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G149700 [exp] 414 / 7e-143 AT3G59010 565 / 0.0 pectin methylesterase 61 (.1) Potri.002G145500 [exp] 349 / 3e-118 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G067100 [exp] 347 / 3e-117 AT2G45220 691 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.011G025400 [exp] 337 / 8e-113 AT1G11580 638 / 0.0 methylesterase PCR A (.1) Potri.012G014500 [exp] 335 / 1e-111 AT3G49220 789 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G109400 [exp] 333 / 1e-111 AT1G23200 579 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.011G135000 [exp] 333 / 3e-111 AT1G11580 560 / 0.0 methylesterase PCR A (.1) Potri.015G013700 [exp] 334 / 5e-111 AT3G49220 805 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126800 [exp] 326 / 4e-109 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127700 [exp] 325 / 1e-108 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Lus10026729 pacid=23176650 polypeptide=Lus10026729 locus=Lus10026729.g ID=Lus10026729.BGIv1.0 annot-version=v1.0 ATGTCGGATGGTGGTGGTGGTGGCAGCGGCGTAATATACGTGAAGGCTGGAACTTATAAGGAAAACCTGAATTTCAAGACGAAACAAAAGAACGTAGTGT TGGTTGGGGACGGAAAGGGCAAGACCGTCATTGTGGGGAGCAGAAATGCCGACGATGGATCCACCACCTACGACTCCGCCACTGTTGCCGCAATGGGCGA CGGATTCATGGCCAGAGACCTAACGATTGTAAACAGCGCGGGGCCATCAAAGCACCAGGCTGTAGCACTCCGGGTTGGATCAGACCGTGCCGTGATATTC CGGTGCTCCATTCAGGGATACCAGGACACTCTCTACACGCTCTCCAAGCGCCAGTTCTACCGCGAAACCGACATCTATGGCACCGTCGACTTCATCTTCG GCAACTCCGCCGTCGTCTTCCAGAACTGCAACATATACACCCGGTCGGGATCCCGCGGAGACAACTTCATAACCGCCCAGGGTCGGACCGACCCGAACCA GAACACCGGGATCTCCATCCACAACTGCAGGATCGAATCGGACGGTTCGGGTGCCAAGACCTACCTTGGGAGGCCGTGGAAGGAGTATTCGAGGACGGTG GTGATGCAGTCGGTTATCGGAGGCCACGTGAGGTCTGTTGTGATGCTGGGTGTTATCGGAGGCCGCCCGGCCTCAGCCGGGTGGGCCCCCTGGTCCGGCG GTTTCGCCCTGAAGACTCTTTACTATGCGGAGTACATGAACTCCGGTCCCGGAGCGGGGATTTCGGGTCGGGTATCGTGGCCGGGGTATAAGGGAGCGGT TGGACCGTTGGAGGCAGGGAAATTTACGGTTGGGCAGTTGATTGGCGGGAACTCGTGGCTGCCGTCCACCGGAGTGTCGTTTGATGCCGGCTTGATTGGT GTCTAG
AA sequence Show only first row Show all	>Lus10026729 pacid=23176650 polypeptide=Lus10026729 locus=Lus10026729.g ID=Lus10026729.BGIv1.0 annot-version=v1.0 MSDGGGGGSGVIYVKAGTYKENLNFKTKQKNVVLVGDGKGKTVIVGSRNADDGSTTYDSATVAAMGDGFMARDLTIVNSAGPSKHQAVALRVGSDRAVIF RCSIQGYQDTLYTLSKRQFYRETDIYGTVDFIFGNSAVVFQNCNIYTRSGSRGDNFITAQGRTDPNQNTGISIHNCRIESDGSGAKTYLGRPWKEYSRTV VMQSVIGGHVRSVVMLGVIGGRPASAGWAPWSGGFALKTLYYAEYMNSGPGAGISGRVSWPGYKGAVGPLEAGKFTVGQLIGGNSWLPSTGVSFDAGLIG V

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59010		PME61, PME35	pectin methylesterase 61 (.1)		Lus10026729 [exp]	0	1
AT5G62040		BFT	brother of FT and TFL1, PEBP (...		Lus10027442 [exp]	2.0	0.8890
					Lus10043242 [exp]	8.5	0.7895
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10015279 [exp]	10.8	0.8647
AT3G59010		PME61, PME35	pectin methylesterase 61 (.1)		Lus10025510 [exp]	11.3	0.8743
AT3G54200			Late embryogenesis abundant (L...		Lus10035612 [exp]	12.2	0.8401
					Lus10005901 [exp]	15.4	0.8222
AT1G12480		SLAC1, RCD3, CD...	SLOW ANION CHANNEL-ASSOCIATED ...		Lus10006678 [exp]	16.4	0.8284
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Lus10016442 [exp]	20.3	0.8056
AT2G21080			unknown protein		Lus10036448 [exp]	21.2	0.8176
					Lus10037540 [exp]	28.6	0.8033

Compare expression of checked genes

Lus10026729 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.