Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43060 83 / 6e-21 bHLH AtIBH1, bHLH158 ILI1 binding bHLH 1 (.1) AT5G57780 45 / 1e-06 P1R1 P1R1, unknown protein AT3G58850 44 / 5e-06 HLH2, PAR2 phy rapidly regulated 2 (.1) AT4G30180 43 / 9e-06 bHLH bHLH146 sequence-specific DNA binding transcription factors;transcription regulators (.1) AT1G27740 43 / 2e-05 bHLH bHLH054, ROOT HAIR DEFECTIVE 6-LIKE 4(RSL4) root hair defective 6-like 4 (.1) AT5G43175 42 / 5e-05 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G33880 42 / 6e-05 bHLH RSL2, bHLH085 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) AT2G42870 40 / 7e-05 PAR1 ,HLH1 HELIX-LOOP-HELIX 1, phy rapidly regulated 1 (.1) AT3G21330 40 / 0.0003 bHLH bHLH087 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G05800 39 / 0.0005 bHLH bHLH150, AIF1 AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025511 [exp] 179 / 1e-58 AT2G43060 98 / 9e-27 ILI1 binding bHLH 1 (.1) Lus10030844 [exp] 45 / 1e-06 AT1G23965 48 / 2e-08 unknown protein Lus10033488 [exp] 44 / 1e-05 AT4G00120 143 / 4e-43 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10001068 [exp] 43 / 3e-05 AT4G33880 179 / 2e-53 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) Lus10042647 [exp] 42 / 4e-05 AT3G50330 163 / 1e-49 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10004315 [exp] 42 / 5e-05 AT4G33880 179 / 3e-53 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) Lus10030641 [exp] 40 / 7e-05 AT1G23965 42 / 3e-06 unknown protein Lus10005710 [exp] 41 / 0.0001 AT3G50330 160 / 1e-48 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10012670 [exp] 40 / 0.0003 AT3G50330 158 / 3e-48 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G232500 [exp] 99 / 2e-26 AT2G43060 79 / 1e-18 ILI1 binding bHLH 1 (.1) Potri.014G149800 [exp] 94 / 6e-25 AT2G43060 82 / 3e-20 ILI1 binding bHLH 1 (.1) Potri.002G060100 [exp] 50 / 2e-08 AT3G58850 80 / 4e-20 phy rapidly regulated 2 (.1) Potri.005G201500 [exp] 50 / 2e-08 AT3G58850 82 / 4e-21 phy rapidly regulated 2 (.1) Potri.018G099100 [exp] 43 / 1e-05 AT4G30410 135 / 1e-40 sequence-specific DNA binding transcription factors (.1.2) Potri.014G118300 [exp] 43 / 1e-05 AT2G47270 62 / 2e-13 UPBEAT1, sequence-specific DNA binding transcription factors;transcription regulators (.1) Potri.002G119200 [exp] 44 / 2e-05 AT4G33880 186 / 3e-55 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) Potri.005G012400 [exp] 43 / 2e-05 AT1G09250 109 / 1e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.016G120800 [exp] 42 / 3e-05 AT5G01310 109 / 3e-28 APRATAXIN-like (.1) Potri.014G017100 [exp] 42 / 3e-05 AT2G14760 179 / 2e-53 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026730 pacid=23176621 polypeptide=Lus10026730 locus=Lus10026730.g ID=Lus10026730.BGIv1.0 annot-version=v1.0 ATGGCGTCAAAAGATGATAGAATCATCAATACAATTTCAAGCTCTACACCAGAGAGAACCTTTGCCCACCAATTCCTCACTTCCCTCCAGAAACTAAGAA CCAATCCCTCCAACACTAGGATGACAAGACGACGCCGTAGCGTGAGAATCAAGGTAGCGGCCTATTCCTCCATGGCTCGAACCATCGGATCCCGACGAGT ATGGAGCCGGGCCCTCCTCTCAAGGATCAGAACCCGCGGCCGCCTCAACAACACACCAAATTCGATGAGGAAGAAGGAGCCGATGAGTCGAGTAAAGATG TTGAGGAAGCTTGTACCGGGAGGAACGAGTATGAGGATGGATAAGCTGTTGGAAGAAACGGCGCATTATGTTCAGTGTTTGGCTGTTCAGATTAGGGTGA TGCGGACCATAGCCGATCATTACTCTGGTCTGAGTAATTAA
AA sequence Show only first row Show all	>Lus10026730 pacid=23176621 polypeptide=Lus10026730 locus=Lus10026730.g ID=Lus10026730.BGIv1.0 annot-version=v1.0 MASKDDRIINTISSSTPERTFAHQFLTSLQKLRTNPSNTRMTRRRRSVRIKVAAYSSMARTIGSRRVWSRALLSRIRTRGRLNNTPNSMRKKEPMSRVKM LRKLVPGGTSMRMDKLLEETAHYVQCLAVQIRVMRTIADHYSGLSN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43060	bHLH	AtIBH1, bHLH158	ILI1 binding bHLH 1 (.1)		Lus10026730 [exp]	0	1
AT5G20480		EFR	EF-TU receptor (.1)		Lus10024681 [exp]	1.0	0.8567
AT5G22090			Protein of unknown function (D...		Lus10004098 [exp]	7.3	0.8246
AT3G16180			Major facilitator superfamily ...		Lus10014537 [exp]	8.9	0.7994
AT4G08850			Leucine-rich repeat receptor-l...		Lus10019036 [exp]	13.6	0.8202
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10018915 [exp]	14.9	0.8337
AT1G79710			Major facilitator superfamily ...		Lus10041620 [exp]	15.9	0.7267
AT3G11280	MYB		Duplicated homeodomain-like su...		Lus10014837 [exp]	18.0	0.7959
AT4G16370		ATOPT3	oligopeptide transporter (.1)		Lus10038784 [exp]	20.6	0.8158
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Lus10033041 [exp]	21.2	0.8016
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10031230 [exp]	21.3	0.8091

Compare expression of checked genes

Lus10026730 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.