Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43280 88 / 2e-22 FAR1_related Far-red impaired responsive (FAR1) family protein (.1) AT3G07500 62 / 1e-12 FAR1_related Far-red impaired responsive (FAR1) family protein (.1) AT4G12850 59 / 2e-11 FAR1_related Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2), Far-red impaired responsive (FAR1) family protein (.3) AT2G27110 52 / 2e-08 FAR1_related FRS3 FAR1-related sequence 3 (.1.2.3) AT3G59470 48 / 2e-07 FAR1_related Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) AT2G32250 48 / 4e-07 FAR1_related FRS2 FAR1-related sequence 2 (.1.2.3.4) AT4G15090 45 / 4e-06 FAR1_related FAR1 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) AT4G38180 44 / 6e-06 FAR1_related FRS5 FAR1-related sequence 5 (.1) AT1G80010 42 / 4e-05 FAR1_related FRS8 FAR1-related sequence 8 (.1) AT5G18960 42 / 5e-05 FAR1_related FRS12 FAR1-related sequence 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025517 [exp] 109 / 5e-32 AT2G43280 87 / 1e-22 Far-red impaired responsive (FAR1) family protein (.1) Lus10022979 [exp] 50 / 2e-08 AT4G38180 85 / 8e-20 FAR1-related sequence 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G029400 [exp] 89 / 8e-23 AT2G43280 319 / 4e-112 Far-red impaired responsive (FAR1) family protein (.1) Potri.007G129101 [exp] 85 / 4e-22 AT2G43280 142 / 6e-44 Far-red impaired responsive (FAR1) family protein (.1) Potri.002G239400 [exp] 71 / 7e-16 AT4G12850 207 / 1e-68 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2), Far-red impaired responsive (FAR1) family protein (.3) Potri.014G176500 [exp] 69 / 3e-15 AT3G07500 275 / 2e-94 Far-red impaired responsive (FAR1) family protein (.1) Potri.014G176600 [exp] 65 / 1e-13 AT4G12850 178 / 5e-57 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2), Far-red impaired responsive (FAR1) family protein (.3) Potri.009G158400 [exp] 64 / 7e-13 AT2G27110 1138 / 0.0 FAR1-related sequence 3 (.1.2.3) Potri.007G129000 [exp] 61 / 2e-12 AT2G43280 133 / 9e-40 Far-red impaired responsive (FAR1) family protein (.1) Potri.005G257600 [exp] 62 / 6e-12 AT4G38180 891 / 0.0 FAR1-related sequence 5 (.1) Potri.002G239300 [exp] 61 / 8e-12 AT2G43280 130 / 2e-37 Far-red impaired responsive (FAR1) family protein (.1) Potri.004G196300 [exp] 61 / 9e-12 AT2G27110 1115 / 0.0 FAR1-related sequence 3 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026732 pacid=23176627 polypeptide=Lus10026732 locus=Lus10026732.g ID=Lus10026732.BGIv1.0 annot-version=v1.0 ATGGAGGATTCTCCTGGACAGGACATGGTCGGAGCAGTAGATGAAGACGAGTCGATTGTAGAACCATGTGAGGGTATGGAATTTGATTCAGAAGATGCTG TTAAGATGTTCTATGATGAATATGCTCGGAAACTAGGATTTGTCATGCGTGTGATGACTTGTCGTCGTTCTGAAAGGAATGGGAGGATTGTTGCCTCTGC AGTTGAGGATGAGAAGGACAAGCGGATTCAAGAACTGACGATGGAGATGCGGAACAAGAAGCGGTTATGCACCATGTATCAACAACAGCTGACAGCATTC ATTAAGATCGTCGAAGAGCATAACGAGCAACTGTCAATGAAAGTTGAAAATGTAGTGAAAGATATCAAAGAGGTTGAACCTATAGAAGAGCAGTAG
AA sequence Show only first row Show all	>Lus10026732 pacid=23176627 polypeptide=Lus10026732 locus=Lus10026732.g ID=Lus10026732.BGIv1.0 annot-version=v1.0 MEDSPGQDMVGAVDEDESIVEPCEGMEFDSEDAVKMFYDEYARKLGFVMRVMTCRRSERNGRIVASAVEDEKDKRIQELTMEMRNKKRLCTMYQQQLTAF IKIVEEHNEQLSMKVENVVKDIKEVEPIEEQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07500	FAR1_related		Far-red impaired responsive (F...		Lus10026732 [exp]	0	1
					Lus10032721 [exp]	5.5	0.7553
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10011717 [exp]	7.1	0.7876
					Lus10017219 [exp]	12.2	0.7841
AT2G39260			binding;RNA binding (.1)		Lus10030801 [exp]	13.4	0.7837
AT1G61100			disease resistance protein (TI...		Lus10025112 [exp]	17.2	0.7778
AT2G32760			unknown protein		Lus10022575 [exp]	18.2	0.7481
AT4G24190		AtHsp90-7, HSP9...	SHEPHERD, HEAT SHOCK PROTEIN 9...		Lus10035109 [exp]	20.2	0.7767
AT5G45190			Cyclin family protein (.1.2)		Lus10018272 [exp]	24.2	0.7833
AT4G05440		EDA35	embryo sac development arrest ...		Lus10000812 [exp]	26.3	0.7595
AT1G04480			Ribosomal protein L14p/L23e fa...		Lus10008065 [exp]	29.0	0.7486

Compare expression of checked genes

Lus10026732 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.