Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43140 175 / 5e-55 bHLH bHLH129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G05805 160 / 8e-49 bHLH bHLH128 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G42280 126 / 2e-35 bHLH bHLH130 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G35460 115 / 3e-32 bHLH bHLH080 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G51140 117 / 9e-32 bHLH bHLH122 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G09180 108 / 2e-29 bHLH bHLH081 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G34530 67 / 1e-13 bHLH bHLH063, CIB1 cryptochrome-interacting basic-helix-loop-helix 1 (.1) AT1G25330 66 / 1e-13 bHLH HAF, bHLH075, CESTA HALF FILLED, CESTA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G58010 67 / 2e-13 bHLH LRL3, bHLH082 LJRHL1-like 3 (.1) AT4G30980 66 / 3e-13 bHLH LRL2, bHLH069 LJRHL1-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025518 [exp] 263 / 1e-88 AT1G05805 242 / 2e-77 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10031255 [exp] 134 / 2e-40 AT2G42280 172 / 5e-53 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10031826 [exp] 134 / 9e-39 AT1G51140 182 / 3e-54 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10037484 [exp] 116 / 1e-31 AT2G42280 191 / 2e-57 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10015704 [exp] 116 / 2e-31 AT2G42280 194 / 2e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10021023 [exp] 115 / 2e-30 AT3G12160 384 / 3e-132 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10023829 [exp] 91 / 3e-22 AT3G12160 377 / 5e-132 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10021846 [exp] 66 / 5e-13 AT2G24260 275 / 3e-90 LJRHL1-like 1 (.1) Lus10040448 [exp] 64 / 2e-12 AT4G34530 177 / 4e-53 cryptochrome-interacting basic-helix-loop-helix 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G150600 [exp] 200 / 2e-64 AT1G05805 265 / 1e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G231700 [exp] 197 / 4e-63 AT1G05805 274 / 6e-90 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G207200 [exp] 133 / 9e-38 AT2G42280 221 / 2e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.001G017300 [exp] 131 / 4e-37 AT1G51140 237 / 7e-75 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G057600 [exp] 129 / 6e-37 AT2G42280 278 / 3e-92 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.009G064700 [exp] 130 / 8e-37 AT2G42280 225 / 5e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.016G050500 [exp] 128 / 3e-36 AT2G42280 296 / 2e-98 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.001G270000 [exp] 117 / 6e-32 AT2G42280 198 / 7e-60 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.019G079900 [exp] 112 / 5e-31 AT1G35460 228 / 1e-74 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G107500 [exp] 111 / 1e-30 AT1G35460 223 / 1e-72 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10026733 pacid=23176599 polypeptide=Lus10026733 locus=Lus10026733.g ID=Lus10026733.BGIv1.0 annot-version=v1.0 ATGGAAACTTGGGACAATAACAACAACTCCAATTCAATCACATTCTCATCCTTAGGCGGACAATCGAACAACAAGCGATATCGAAATATGGACGGGGAAT TTTATACCTCCTACAATGGCTTAGAAACCCAGTTTAGTATGCCACAGACGACTCTGGAGATGGCAACAGTGGACAAGATGTTACAGATACCTGAAGACTC TGTTCCGTGCAAAGTTCGAGCTAAGCGTGGATGCGCTACTCACCCGCGAAGCATTGCTGAAAGGGAAAGACGAACGAGAATAAGCGGGAGATTGAAGAAA CTTCAAGATCTTGTTCCCAACATGGATAAGCAAACGAGCTATTCAGACATGTTGGACTTGGCGGTTCACCACATCAAAGGTCTCCAAAATGAACTTGAGG TGTGTATGAAACTTAGATTCTCTCGTTTGATAACAAAAACAGTAAATATCAAAATTTGTGTATTTGATAGAAAAAATTGA
AA sequence Show only first row Show all	>Lus10026733 pacid=23176599 polypeptide=Lus10026733 locus=Lus10026733.g ID=Lus10026733.BGIv1.0 annot-version=v1.0 METWDNNNNSNSITFSSLGGQSNNKRYRNMDGEFYTSYNGLETQFSMPQTTLEMATVDKMLQIPEDSVPCKVRAKRGCATHPRSIAERERRTRISGRLKK LQDLVPNMDKQTSYSDMLDLAVHHIKGLQNELEVCMKLRFSRLITKTVNIKICVFDRKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43140	bHLH	bHLH129	basic helix-loop-helix (bHLH) ...		Lus10026733 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10007829 [exp]	3.0	0.8690
AT5G50530			CBS / octicosapeptide/Phox/Bem...		Lus10032625 [exp]	14.0	0.8641
AT1G19430			S-adenosyl-L-methionine-depend...		Lus10032717 [exp]	18.8	0.8753
AT4G14290			alpha/beta-Hydrolases superfam...		Lus10034017 [exp]	19.3	0.8674
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10003395 [exp]	21.7	0.8700
AT1G01650		ATSPPL4	ARABIDOPSIS THALIANA SIGNAL PE...		Lus10036364 [exp]	25.8	0.8630
AT4G30310			FGGY family of carbohydrate ki...		Lus10001312 [exp]	35.9	0.8382
AT3G54480		SKP5, SKIP5	SKP1/ASK-interacting protein 5...		Lus10039556 [exp]	38.2	0.8441
AT5G57740		XBAT32	XB3 ortholog 2 in Arabidopsis ...		Lus10019974 [exp]	40.7	0.8342
AT4G34140			D111/G-patch domain-containing...		Lus10039947 [exp]	45.5	0.8486

Compare expression of checked genes

Lus10026733 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.