Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31690 445 / 3e-153 alpha/beta-Hydrolases superfamily protein (.1) AT1G05800 441 / 8e-152 DGL DONGLE, alpha/beta-Hydrolases superfamily protein (.1) AT1G06800 274 / 8e-87 PLA-I{gamma}1 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) AT2G30550 270 / 3e-85 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G51440 255 / 1e-78 alpha/beta-Hydrolases superfamily protein (.1) AT1G30370 223 / 2e-66 DLAH DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) AT2G44810 192 / 2e-56 DAD1 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) AT1G06250 180 / 3e-51 alpha/beta-Hydrolases superfamily protein (.1) AT4G16820 178 / 1e-49 PLA-I{beta]2 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) AT4G18550 173 / 9e-49 AtDSEL Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025519 [exp] 875 / 0 AT2G31690 468 / 3e-162 alpha/beta-Hydrolases superfamily protein (.1) Lus10015521 [exp] 194 / 2e-56 AT1G30370 524 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10042914 [exp] 189 / 2e-54 AT2G44810 464 / 1e-163 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10038524 [exp] 188 / 4e-54 AT1G30370 526 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10038526 [exp] 189 / 1e-53 AT1G30370 539 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10041165 [exp] 182 / 2e-52 AT2G44810 464 / 4e-164 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10017975 [exp] 174 / 4e-49 AT2G42690 524 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10023281 [exp] 172 / 2e-48 AT1G30370 342 / 2e-113 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10023280 [exp] 172 / 2e-47 AT1G30370 537 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G231600 [exp] 513 / 4e-180 AT1G05800 524 / 0.0 DONGLE, alpha/beta-Hydrolases superfamily protein (.1) Potri.014G150700 [exp] 511 / 2e-179 AT2G31690 491 / 7e-172 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G044700 [exp] 286 / 1e-90 AT1G06800 662 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.005G218500 [exp] 277 / 2e-87 AT1G06800 652 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G051900 [exp] 276 / 7e-87 AT1G51440 700 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G263200 [exp] 216 / 1e-63 AT1G30370 607 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Potri.009G057900 [exp] 211 / 6e-62 AT1G30370 626 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Potri.002G137900 [exp] 196 / 3e-57 AT2G44810 543 / 0.0 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.014G047700 [exp] 191 / 2e-55 AT2G44810 491 / 9e-174 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.014G047900 [exp] 186 / 3e-53 AT2G44810 557 / 0.0 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10026735 pacid=23176568 polypeptide=Lus10026735 locus=Lus10026735.g ID=Lus10026735.BGIv1.0 annot-version=v1.0 ATGTCAAACGCTACGAGTCACATGATCACGAGTGTGGGTGATGATCATTGCATGGGGTTCGGAGTCCTAGCAAATAGTAAACAGATTTCATACCGGGCCA AACCGTCGGGTCAAAATCTTCACTTAACCAATAAACAAACTACACGAGATCAAGTTCCGCTTCGTTGTGATGTCTTCCCAACATCTCCAACATCTAGCCA TGGAAGGTTGATGACGGAATCATTGGCACAAATGTGGAAGGAGGTGCAAGGCTGTTCTAATTGGGAAGGCCTCGTTTCGCCGTTGCATCCTCTTCTTCAG CAAGAGCTCGTTCGTTATGGTGAGCTCTTGTCGGCTTGCTACAAGGCATTTGACCTTGACCCGAACTCTAGCCGTTACTTGAATTGCAAGTATGGTAAGA AGAGCATGTTCGAGCAACTCGGAATGGAGGGTTTCGGGTATGAGGTAACGAAGTACATCTATGCCACTGCGCCCAACGTAATGACTAGCATCCCTATCCA GCGGGTCACTACCTGCTGCGGGCGCTGGATAGGGTATGTAGCCGTGACATCAAATGCCACTGCCAAGAGGCTAGGGAGAAGGGATATACTCGTCACGTTT CGTGGAACTGTGACGAATCAAGAATGGGTAGCTAACCTCATGAGCTCTTTAACTCCGGCCAGGCTGGACCCTTCTGATCCTCGTCCAGATGTTCAAGTGG AATCTGGGTTCCTAAGCTTGTACACCTCGGACGAGACGAGCAACAAGTTCGGCCTCGAGAGCTGTCGAGAGCAGCTCCTCTCCGAAGTCTCGAGGTTACT CATGAAGTACAAAGGAGAGGAGCTCAGCATTTCTTTGGCCGGACACAGCATGGGGAGCTCCCTAGCTCACCTACTAGCATACGACATCTCAGAGCTCGGG TTGAATAAGGTCAACCGGAGCAAGAGAGACGGTACGGATCGCCAACACCACCAGCAGGTAGTGCCGGTGACAGTTTTTTCGTATGGCGGGCCCCGGGTAG GGAATGCCGGGTTCAAGAGTAGGTGCGAGGAGTTGGGAGTGAAAGTGGTGAGAGTCGTGAATGTGAATGACCCTGTCACAAGGCTTCCGGGGGTCTTCCT CAACGAGGGTTTAAGGGTCTGGGGGAAGTACGAGATGCCCTGGAGTTGCTCGTGCTACTCGCACGTGGGAGTGGAGGTGGTACTCGACTTCTTTAACGTG AAGAACCCTTCATTGGTTCATGACTTGGAAGCATATATTAATAGCCTTCTGAGCTGTACGAGGAAGACGAGAAGTATAAAGGACGACGAGGGTAATGTAG TTGTAAATGTTAGGGATGTTTTCGAGAGGGAAAAAGGGCCTTTTGAGCTGTCTGGGCTGTTAAGGAAAGCGGCGAGTAGTATGGTTAACTTGTTTGTTCA GACTTCCGACCAAGGAGCTGAATTCGTGACCGATCATAATTTCTTAGGACTCATGAATTGCATGGCTTTGTTTATGTTTGTTGGGATCTCGTAG
AA sequence Show only first row Show all	>Lus10026735 pacid=23176568 polypeptide=Lus10026735 locus=Lus10026735.g ID=Lus10026735.BGIv1.0 annot-version=v1.0 MSNATSHMITSVGDDHCMGFGVLANSKQISYRAKPSGQNLHLTNKQTTRDQVPLRCDVFPTSPTSSHGRLMTESLAQMWKEVQGCSNWEGLVSPLHPLLQ QELVRYGELLSACYKAFDLDPNSSRYLNCKYGKKSMFEQLGMEGFGYEVTKYIYATAPNVMTSIPIQRVTTCCGRWIGYVAVTSNATAKRLGRRDILVTF RGTVTNQEWVANLMSSLTPARLDPSDPRPDVQVESGFLSLYTSDETSNKFGLESCREQLLSEVSRLLMKYKGEELSISLAGHSMGSSLAHLLAYDISELG LNKVNRSKRDGTDRQHHQQVVPVTVFSYGGPRVGNAGFKSRCEELGVKVVRVVNVNDPVTRLPGVFLNEGLRVWGKYEMPWSCSCYSHVGVEVVLDFFNV KNPSLVHDLEAYINSLLSCTRKTRSIKDDEGNVVVNVRDVFEREKGPFELSGLLRKAASSMVNLFVQTSDQGAEFVTDHNFLGLMNCMALFMFVGIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31690			alpha/beta-Hydrolases superfam...		Lus10026735 [exp]	0	1
AT2G39855			unknown protein		Lus10040250 [exp]	45.0	0.6987
AT1G33970			P-loop containing nucleoside t...		Lus10009483 [exp]	71.0	0.6389
AT3G26610			Pectin lyase-like superfamily ...		Lus10029121 [exp]	109.8	0.6505
AT3G13682		LDL2	LSD1-like2 (.1)		Lus10037885 [exp]	120.8	0.6265

Compare expression of checked genes

Lus10026735 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.