Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G30280 129 / 5e-34 HXXXD-type acyl-transferase family protein (.1) AT1G24430 128 / 1e-33 HXXXD-type acyl-transferase family protein (.1) AT3G26040 127 / 3e-33 HXXXD-type acyl-transferase family protein (.1) AT1G24420 117 / 9e-30 HXXXD-type acyl-transferase family protein (.1) AT5G47980 114 / 1e-28 HXXXD-type acyl-transferase family protein (.1) AT5G47950 107 / 5e-26 HXXXD-type acyl-transferase family protein (.1) AT4G15390 106 / 1e-25 HXXXD-type acyl-transferase family protein (.1) AT4G15400 102 / 2e-24 HXXXD-type acyl-transferase family protein (.1) AT5G23970 100 / 2e-23 HXXXD-type acyl-transferase family protein (.1) AT5G41040 57 / 6e-09 HXXXD-type acyl-transferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039330 [exp] 294 / 7e-97 AT3G26040 240 / 2e-74 HXXXD-type acyl-transferase family protein (.1) Lus10025522 [exp] 214 / 1e-65 AT3G26040 236 / 9e-73 HXXXD-type acyl-transferase family protein (.1) Lus10030751 [exp] 179 / 1e-52 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10013231 [exp] 170 / 3e-49 AT3G26040 291 / 5e-94 HXXXD-type acyl-transferase family protein (.1) Lus10025520 [exp] 135 / 2e-38 AT3G26040 64 / 2e-21 HXXXD-type acyl-transferase family protein (.1) Lus10001063 [exp] 125 / 5e-35 AT5G47980 74 / 5e-16 HXXXD-type acyl-transferase family protein (.1) Lus10014695 [exp] 124 / 1e-31 AT3G26040 221 / 2e-66 HXXXD-type acyl-transferase family protein (.1) Lus10004441 [exp] 121 / 6e-31 AT3G26040 196 / 2e-57 HXXXD-type acyl-transferase family protein (.1) Lus10000319 [exp] 119 / 3e-30 AT3G26040 198 / 2e-58 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G010700 [exp] 162 / 4e-46 AT3G26040 306 / 3e-100 HXXXD-type acyl-transferase family protein (.1) Potri.005G250500 [exp] 147 / 2e-40 AT3G26040 304 / 3e-99 HXXXD-type acyl-transferase family protein (.1) Potri.010G056300 [exp] 135 / 3e-36 AT3G26040 347 / 4e-116 HXXXD-type acyl-transferase family protein (.1) Potri.017G010600 [exp] 132 / 3e-35 AT3G26040 265 / 3e-84 HXXXD-type acyl-transferase family protein (.1) Potri.010G056400 [exp] 131 / 8e-35 AT3G26040 354 / 5e-119 HXXXD-type acyl-transferase family protein (.1) Potri.010G056450 [exp] 131 / 1e-34 AT3G26040 350 / 3e-117 HXXXD-type acyl-transferase family protein (.1) Potri.010G053800 [exp] 129 / 5e-34 AT1G24430 425 / 6e-147 HXXXD-type acyl-transferase family protein (.1) Potri.010G054002 [exp] 126 / 8e-33 AT1G24430 426 / 3e-147 HXXXD-type acyl-transferase family protein (.1) Potri.010G054100 [exp] 126 / 1e-32 AT3G26040 397 / 1e-135 HXXXD-type acyl-transferase family protein (.1) Potri.008G033500 [exp] 119 / 3e-30 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10026736 pacid=23176542 polypeptide=Lus10026736 locus=Lus10026736.g ID=Lus10026736.BGIv1.0 annot-version=v1.0 ATGGCGCACGATCTCCTCGATGCATTCTCAATTGCTTCCTTTCTAAAGGACTGGTCCGCCATTGCTCGACGGCTGCAAAATCCGGACGCCGGGGATTTTG TCGGGAATCCGAAGTTCGTCGGTGGTGCCATATTTCCGCAGAACGAAGCGTTGTTTGAGAGATTGGTCGATCAAGGGCCGTCGTCAACGGAGACGACGAC GACGGTGGCCAGGAAGAGAAGTGTCGTCACTAGACGGTTTGTGTTTCGTGCGCCGGGGTTGGCGAGTTTGAAAGATGAACTCATGGGATCCACCGTTGGA AAAGCGATTAACAACACTCCTAGTCGAGTTCATGCGGTATCAGCACTCCTCTGCTCGTCGATTCTCCGTGCTTTCAAATCCGTTGGAAGAGCAACGACCT CGACCGGCCGACCAGTCATCGCCGTCACTCAGGCTGTGAATCTACGAAAGAAGGCTGACCCCGAATTGCCGTCAAACTTAATGGGCAACTACATAATCAA CGCAGTAGCCAATCTACCCGCTATAAACCATTCGTCGATGGGCATGGTGGTGAAGGTACTAAGAGATTCGGTGTCGAAGATGGACGCAAAATTCGTGGAA GAGATACGAGGGAAGGAAGGGAAGTCTCCACTAGCAGAAGTGGCGAGAGAAGAGCGAACTGCGGTGGGTAGGGCATGGCGACGGATTTCCTTCTCAAGTT GGAGCCGGTTGGGTTTCTACGAGGTGGATTTTGGGTGGGGGAAACCGGCTTGGTTCGGGTGTTTGCCATGTAGCGACGAGGAGGAGAATGTTGTGGTGGA TCTAGTGATGATTTTGGATACGAGAGATGGGAGTGGGTTGGAAGCTTGGGTTTTCTTGGAGGAAGATGAGATGGCTGTGCTGGAGACTGATCAGTTGCTT CTCTCTTTTGCTTCTTTGGATCCCACTCCACTCACTGGAAGTGACAATGTGTTAACTATTAGGAGTTCAATGTGA
AA sequence Show only first row Show all	>Lus10026736 pacid=23176542 polypeptide=Lus10026736 locus=Lus10026736.g ID=Lus10026736.BGIv1.0 annot-version=v1.0 MAHDLLDAFSIASFLKDWSAIARRLQNPDAGDFVGNPKFVGGAIFPQNEALFERLVDQGPSSTETTTTVARKRSVVTRRFVFRAPGLASLKDELMGSTVG KAINNTPSRVHAVSALLCSSILRAFKSVGRATTSTGRPVIAVTQAVNLRKKADPELPSNLMGNYIINAVANLPAINHSSMGMVVKVLRDSVSKMDAKFVE EIRGKEGKSPLAEVAREERTAVGRAWRRISFSSWSRLGFYEVDFGWGKPAWFGCLPCSDEEENVVVDLVMILDTRDGSGLEAWVFLEEDEMAVLETDQLL LSFASLDPTPLTGSDNVLTIRSSM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10026736 [exp]	0	1
AT4G25600			Oxoglutarate/iron-dependent ox...		Lus10014973 [exp]	1.7	0.9200
AT4G17070			peptidyl-prolyl cis-trans isom...		Lus10037182 [exp]	2.4	0.9353
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10021023 [exp]	4.7	0.9403
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10000021 [exp]	10.8	0.8586
AT5G58700		ATPLC4	phosphatidylinositol-speciwc p...		Lus10018241 [exp]	13.0	0.9056
AT4G26550			Got1/Sft2-like vescicle transp...		Lus10032895 [exp]	15.3	0.8705
AT3G08030			Protein of unknown function, D...		Lus10016394 [exp]	15.9	0.9188
AT2G37195			unknown protein		Lus10026508 [exp]	20.4	0.8618
AT1G28290		AGP31	arabinogalactan protein 31 (.1...		Lus10025526 [exp]	21.1	0.9156
					Lus10003802 [exp]	24.2	0.9122

Compare expression of checked genes

Lus10026736 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.