Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41040 249 / 3e-80 HXXXD-type acyl-transferase family protein (.1.2) AT5G63560 224 / 7e-71 HXXXD-type acyl-transferase family protein (.1) AT3G48720 209 / 5e-65 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT5G48930 160 / 2e-46 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT2G40230 120 / 5e-31 HXXXD-type acyl-transferase family protein (.1) AT1G03390 119 / 8e-31 HXXXD-type acyl-transferase family protein (.1) AT1G65450 107 / 1e-27 HXXXD-type acyl-transferase family protein (.1.2.3) AT2G19070 108 / 8e-27 SHT spermidine hydroxycinnamoyl transferase (.1) AT1G27620 108 / 1e-26 HXXXD-type acyl-transferase family protein (.1) AT5G17540 104 / 3e-25 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025523 [exp] 518 / 0 AT5G41040 406 / 3e-139 HXXXD-type acyl-transferase family protein (.1.2) Lus10039329 [exp] 422 / 7e-148 AT5G41040 398 / 5e-136 HXXXD-type acyl-transferase family protein (.1.2) Lus10035189 [exp] 292 / 5e-97 AT5G41040 440 / 2e-152 HXXXD-type acyl-transferase family protein (.1.2) Lus10035188 [exp] 284 / 7e-96 AT5G41040 313 / 3e-105 HXXXD-type acyl-transferase family protein (.1.2) Lus10032019 [exp] 277 / 3e-91 AT5G41040 446 / 1e-154 HXXXD-type acyl-transferase family protein (.1.2) Lus10032020 [exp] 281 / 5e-91 AT5G41040 443 / 2e-151 HXXXD-type acyl-transferase family protein (.1.2) Lus10035190 [exp] 264 / 8e-86 AT5G41040 419 / 5e-144 HXXXD-type acyl-transferase family protein (.1.2) Lus10032554 [exp] 253 / 5e-82 AT5G41040 640 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10043189 [exp] 253 / 6e-82 AT5G41040 635 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G326300 [exp] 275 / 3e-90 AT5G41040 677 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.017G068500 [exp] 261 / 1e-85 AT5G41040 583 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.015G100800 [exp] 258 / 1e-83 AT5G41040 644 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.014G166600 [exp] 228 / 6e-72 AT5G41040 394 / 2e-134 HXXXD-type acyl-transferase family protein (.1.2) Potri.003G183900 [exp] 158 / 2e-45 AT5G48930 758 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.001G042900 [exp] 154 / 6e-44 AT5G48930 749 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G105500 [exp] 152 / 4e-43 AT5G48930 556 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G104700 [exp] 152 / 5e-43 AT5G48930 489 / 5e-172 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G028000 [exp] 150 / 3e-42 AT5G48930 504 / 6e-178 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G028100 [exp] 149 / 5e-42 AT5G48930 509 / 5e-180 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10026737 pacid=23176560 polypeptide=Lus10026737 locus=Lus10026737.g ID=Lus10026737.BGIv1.0 annot-version=v1.0 ATGTCTTGGAATCATTATATTGGAGACGGGATAGCCGCCATTGAATTCGTCAACTCGTGGGCGGAAAAGGCACGAGGCTTGCCGCTTTCGGTTCCGCCAT TCCTCGACCGCACATTACTCAAAGCACGAGTACCGCTATCGATAGGCTACCACCACTCCGAATACGACGATTTGAAGGACATATCGTCAAACTTCAACGA GTTCCACAACGAACCTATAGTCTTCGAGTACGTCCACTTTACGGTAACCAAAATTTGCAAGATCAAGCAAAGGGTCCTCTCCAGCGGTGCAGGACTCGTC ACCGGTTGCTCCACTTTCGAAGCGGTCGTAGCTTTCGTATGGCGGGCTCGAATAAAGGCCCTCAAGATGGTTCCCGACCAAGAAACGCGACTCATGTTGG TCGTCAACGCCAGGGACAGGCTGGACCCGCCGCTGCCCAAAGGGTATTTCGGGAACGCGGTCAAGATGATGACCGCCAGCACGTGGAGGGCACGCGACAT CTTGGACAAGCCGCTTTGTTACGCGGTGAAGAAAATTCAGGACGGAATCGCCGGGTGTGGTGACGAGGTTATAAGGTCTGCTATCGATTATATGGGGAGT ACACGAGTAGCGGCACGGCCTTTGGCTAGCACGATGATAGCGACCGCGTGGTATAGGCTGCCCACGGATTCGGCCGATTTTGGTTGGGGCGGACCGGTGG CGTTCGAACCGGTTGAGTTGCCTCAGTACGAATCGATTACTTTTCTAGCTCATCATGAAGAGTTGAAGAGCTTAAATGCGCTTATTGGACTGCCCATCTC CGCTCTGAAAACCTTCCAAGAATTGGGGACGCAGATCTAA
AA sequence Show only first row Show all	>Lus10026737 pacid=23176560 polypeptide=Lus10026737 locus=Lus10026737.g ID=Lus10026737.BGIv1.0 annot-version=v1.0 MSWNHYIGDGIAAIEFVNSWAEKARGLPLSVPPFLDRTLLKARVPLSIGYHHSEYDDLKDISSNFNEFHNEPIVFEYVHFTVTKICKIKQRVLSSGAGLV TGCSTFEAVVAFVWRARIKALKMVPDQETRLMLVVNARDRLDPPLPKGYFGNAVKMMTASTWRARDILDKPLCYAVKKIQDGIAGCGDEVIRSAIDYMGS TRVAARPLASTMIATAWYRLPTDSADFGWGGPVAFEPVELPQYESITFLAHHEELKSLNALIGLPISALKTFQELGTQI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10026737 [exp]	0	1
AT5G03100			F-box/RNI-like superfamily pro...		Lus10029953 [exp]	3.9	0.7940
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10039839 [exp]	5.5	0.7940
					Lus10026868 [exp]	8.8	0.7833
AT3G16180			Major facilitator superfamily ...		Lus10009506 [exp]	12.8	0.7007
					Lus10033149 [exp]	14.3	0.7007
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10006200 [exp]	15.7	0.7007
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10027028 [exp]	16.9	0.7007
AT1G70690		HWI1, PDLP5	PLASMODESMATA-LOCATED PROTEIN ...		Lus10019334 [exp]	18.1	0.7007
AT2G33280			Major facilitator superfamily ...		Lus10004407 [exp]	19.1	0.6868
AT1G29430			SAUR-like auxin-responsive pro...		Lus10020441 [exp]	19.2	0.7007

Compare expression of checked genes

Lus10026737 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.