Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78170 54 / 2e-08 unknown protein AT4G08910 51 / 1e-07 unknown protein AT1G22250 46 / 5e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025524 [exp] 271 / 4e-92 AT4G08910 49 / 4e-07 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G231400 [exp] 102 / 8e-27 AT4G08910 54 / 4e-09 unknown protein Potri.014G150900 [exp] 79 / 1e-17 AT4G08910 49 / 3e-07 unknown protein Potri.005G165300 [exp] 61 / 4e-11 AT1G78170 124 / 4e-35 unknown protein Potri.002G096100 [exp] 59 / 1e-10 AT1G78170 119 / 3e-33 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026738 pacid=23176566 polypeptide=Lus10026738 locus=Lus10026738.g ID=Lus10026738.BGIv1.0 annot-version=v1.0 ATGGAGTTCACCACCCAGCTCTCTCTGGCTTCTTCTGGGAAGTTCCATTCTTCCGAAACATCCTCCGAGTCCGGTACCAACTACAACAACCTCAATCCTA AGAAGAGGAAGACCACAACAACGATGATGATGAGTCCGGCCTCTTGCAAGTACTCCTCCAACATTAGTAATGATCTTCATCATGTCATGATGAACAACAA CCGCCGCCCTCTTCCTTTGGACTGGGTGCCATGCCTCGACCTTCATTCGGGGATGATGTACTATATGAACAGGAAGACGTTGAGGAAGAGTTGGAACTTG CCGAACTACAGGGACGATGGTCACCATGATGATGACCGCAGCAATGCCAACTATTTGAACCTCGAACTCAACATGTCCAACAACTACTCTTCCTCTAATT CAAGTCGTGTAAAGGCGAAGCTCGTAGTGCAATCTCAAAGCCGAGTAGCTGAAGAAGGGGGCATGATGACGAGCAATGATAACGACAACGACGAAGGTTG TAATAACACGGTGGCGTTGGCATGCTCGAACTGCCATCTTCTTGTGATCCTGTCGAAATCGTCTCCTTCGTGCCCGAACTGCAAATACATCCATGCTCTT AACCGAACACTGATCCACTCCCCACCACCAAATAATAGTGGTGATCATAGTTACAATAATGGTGGTACTAGGGTTCAACGACATCCTCATCACAAGTCCA TTAATCACACCTTGAGCCTCCTCAATTGA
AA sequence Show only first row Show all	>Lus10026738 pacid=23176566 polypeptide=Lus10026738 locus=Lus10026738.g ID=Lus10026738.BGIv1.0 annot-version=v1.0 MEFTTQLSLASSGKFHSSETSSESGTNYNNLNPKKRKTTTTMMMSPASCKYSSNISNDLHHVMMNNNRRPLPLDWVPCLDLHSGMMYYMNRKTLRKSWNL PNYRDDGHHDDDRSNANYLNLELNMSNNYSSSNSSRVKAKLVVQSQSRVAEEGGMMTSNDNDNDEGCNNTVALACSNCHLLVILSKSSPSCPNCKYIHAL NRTLIHSPPPNNSGDHSYNNGGTRVQRHPHHKSINHTLSLLN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78170			unknown protein		Lus10026738 [exp]	0	1
AT1G62520			unknown protein		Lus10032250 [exp]	7.1	0.6807
AT3G27090			DCD (Development and Cell Deat...		Lus10041557 [exp]	18.5	0.6869
AT3G24150			unknown protein		Lus10043262 [exp]	19.9	0.6998
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10003088 [exp]	20.9	0.7070
AT5G03670			unknown protein		Lus10027723 [exp]	21.5	0.7043
AT4G35140			Transducin/WD40 repeat-like su...		Lus10023993 [exp]	25.3	0.6906
AT5G42240		SCPL42	serine carboxypeptidase-like 4...		Lus10018924 [exp]	26.0	0.7018
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10028686 [exp]	46.2	0.6502
AT5G08120		MPB2C, ATMBP2C,...	movement protein binding prote...		Lus10034653 [exp]	64.6	0.6489
AT4G02610			Aldolase-type TIM barrel famil...		Lus10024849 [exp]	74.5	0.6421

Compare expression of checked genes

Lus10026738 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.