Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09620 134 / 3e-34 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G20920 160 / 3e-33 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G51280 56 / 2e-08 DEAD-box protein abstrakt, putative (.1) AT4G33370 54 / 1e-07 DEA(D/H)-box RNA helicase family protein (.1) AT1G31970 45 / 5e-05 STRS1 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) AT2G33730 45 / 6e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58510 44 / 0.0002 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2), DEA(D/H)-box RNA helicase family protein (.3) AT3G01540 42 / 0.0006 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT5G14610 0 / 1 DEAD box RNA helicase family protein (.1.2) AT5G63120 0 / 1 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025525 [exp] 398 / 1e-137 AT1G20920 451 / 2e-150 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10035328 [exp] 147 / 5e-42 AT1G20920 293 / 3e-94 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10029986 [exp] 147 / 3e-39 AT1G20920 347 / 2e-109 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10043334 [exp] 56 / 3e-08 AT5G63120 752 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10019484 [exp] 56 / 3e-08 AT5G63120 757 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10032135 [exp] 47 / 2e-05 AT5G14610 849 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10008856 [exp] 46 / 3e-05 AT5G51280 851 / 0.0 DEAD-box protein abstrakt, putative (.1) Lus10023252 [exp] 45 / 8e-05 AT5G51280 1015 / 0.0 DEAD-box protein abstrakt, putative (.1) Lus10015384 [exp] 44 / 0.0002 AT3G29390 418 / 9e-142 RS2-interacting KH protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G003600 [exp] 157 / 3e-37 AT1G20920 1201 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G257400 [exp] 156 / 2e-35 AT1G20920 1253 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G224000 [exp] 54 / 9e-08 AT5G51280 1072 / 0.0 DEAD-box protein abstrakt, putative (.1) Potri.005G047301 [exp] 53 / 2e-07 AT5G51280 520 / 0.0 DEAD-box protein abstrakt, putative (.1) Potri.003G098800 [exp] 44 / 0.0002 AT1G31970 726 / 0.0 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) Potri.017G093600 [exp] 43 / 0.0003 AT3G29390 443 / 3e-149 RS2-interacting KH protein (.1) Potri.016G061900 [exp] 42 / 0.0005 AT2G42520 786 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G119000 [exp] 42 / 0.0006 AT3G53110 646 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G038300 [exp] 0 / 1 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.012G084600 [exp] 0 / 1 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026739 pacid=23176648 polypeptide=Lus10026739 locus=Lus10026739.g ID=Lus10026739.BGIv1.0 annot-version=v1.0 ATGGCGGGAGGATTGCGAATCTCCAGAGAGTCACATATTTGGTCATGGACGAGGCTGATCGAATGTTCGACATGGGTTTCGAACCTAAGATCGCTAGGAT TGTGCGTAACATACGTCCCGATTGTCAGACCGTTCTATTTTTTGCAACATTCCCGCAGCAGGTGGATATCTTGGCACGCAAGGTATTACAAACCAGTGAA GATACAAGAAGCTGGTGGGTGGAGTGCGGTGAATAAGGACATAACCCAACTGGCTGAGGTTAGGCCAGAGAAAGATAGGATATTTAGACTGTTAGAGATT CTGGGGGAACGAGATTTCGACAAGGGGAAGAAGAAAATCATAGTATTCATTGAGAAACAGGAGAAATGCAAAGAGCTATTTCGAACCCTGCTGATGTATG GCCATCCTTGTCTTTCTTTCCATGGAGGGAAAGACCAGCAGGACCACGAATCGACGATTTCTGATTTCAAGGAGGGAAAGACCAGCAGGACCGCAAATCG ACCAAGAGGAGGAGAACGGGGCGAGCTTGTCGTAAAGGCGTTAGAGCTCTCGGGGCAGGCCGTGCTAGAGGATTTGAGAGGTCTTGTTGATGGGTTCATG GCGAAAGCGAGTCAAGGGCTCGAGCTGGCTTCTCGGGGGTCTGGCTATGGTGGAAGCGTGTTCAAGTTCGACCAAGAGGAGGAGGAGAAGAGGGTTGCAG CTAAGAAAGCACAGGCGAAAGAGTACGGCTTTGAGGAGGATGAAGAGGCAGGGGCAGAGTCAGGAATTTTGATCGGGAGCGGCCGATATTTGTGGAAGGT GCAAGGTGAGCATTATGAAGCGGAGTTGGAGATCAATGATTTCCCACAGAAAGCTAGGTGGAAGGTGACGCACAAGGCTACGCTGGGACCAATTTCGGAA TGGGCCAGAGCTGCCATCACCACGAGAGGACGGTACATCCAACCGGGGGCTGTGGCAGTTGGAGGTGAGCGGAAGCTCTACTTGTTGATCGAAGGTTCGA GCGAAGTGTCGGTGAAGAGAGCCAAGGCTGAGCTAAAGCGAGTGCTTGAAGGCGTTACTACTAGCCACACACAACCTAGTAGATACTCTGTTGTTTAA
AA sequence Show only first row Show all	>Lus10026739 pacid=23176648 polypeptide=Lus10026739 locus=Lus10026739.g ID=Lus10026739.BGIv1.0 annot-version=v1.0 MAGGLRISRESHIWSWTRLIECSTWVSNLRSLGLCVTYVPIVRPFYFLQHSRSRWISWHARYYKPVKIQEAGGWSAVNKDITQLAEVRPEKDRIFRLLEI LGERDFDKGKKKIIVFIEKQEKCKELFRTLLMYGHPCLSFHGGKDQQDHESTISDFKEGKTSRTANRPRGGERGELVVKALELSGQAVLEDLRGLVDGFM AKASQGLELASRGSGYGGSVFKFDQEEEEKRVAAKKAQAKEYGFEEDEEAGAESGILIGSGRYLWKVQGEHYEAELEINDFPQKARWKVTHKATLGPISE WARAAITTRGRYIQPGAVAVGGERKLYLLIEGSSEVSVKRAKAELKRVLEGVTTSHTQPSRYSVV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20920			P-loop containing nucleoside t...		Lus10026739 [exp]	0	1
AT3G14170			Plant protein of unknown funct...		Lus10008138 [exp]	31.5	0.7974
AT5G18830	SBP	ATSPL7, SPL7	squamosa promoter binding prot...		Lus10033993 [exp]	41.4	0.7969
AT1G06550			ATP-dependent caseinolytic (Cl...		Lus10020758 [exp]	61.9	0.7798
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Lus10011780 [exp]	70.4	0.7686
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Lus10004913 [exp]	80.8	0.6665
AT1G07120			unknown protein		Lus10031293 [exp]	92.9	0.7464
AT1G06470			Nucleotide/sugar transporter f...		Lus10010954 [exp]	97.0	0.7534
AT3G07570			Cytochrome b561/ferric reducta...		Lus10001180 [exp]	97.1	0.7342
AT1G75410	HD	BLH3	BEL1-like homeodomain 3 (.1.2)		Lus10033192 [exp]	118.5	0.7317
AT5G40630			Ubiquitin-like superfamily pro...		Lus10032107 [exp]	184.0	0.7239

Compare expression of checked genes

Lus10026739 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.