Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025526 [exp] 263 / 3e-76 AT1G28290 41 / 0.002 arabinogalactan protein 31 (.1.2) Lus10009837 [exp] 48 / 8e-06 AT5G05500 171 / 1e-54 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10040948 [exp] 47 / 2e-05 AT5G05500 176 / 9e-57 Pollen Ole e 1 allergen and extensin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G231250 [exp] 181 / 1e-46 ND / Potri.014G151101 [exp] 178 / 9e-46 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04554 [flax] [poplar] Extensin_2 Extensin-like region CL0287 [flax] [poplar] Transthyretin PF01190 [flax] [poplar] Pollen_Ole_e_1 Pollen protein Ole e 1 like
Representative CDS sequence Show only first row Show all	>Lus10026740 pacid=23176538 polypeptide=Lus10026740 locus=Lus10026740.g ID=Lus10026740.BGIv1.0 annot-version=v1.0 ATGGCGACTTTCGGTGGCCGCCGAATGGGTTTGCTTTGGCCCCATTTGGCCGTCGCTGTAGCCTTGTCTATCTTAGCATGCAATGTGGGATCTGCCGATG GTGATGCTGCCTACGTTTACTCCTCTCCTCCTCCGCCGTATGAGTACAAATCGCCGCCACCTCCTTCCCCTTCCCCACCTCCTCCTTATCTTTACAAGTC GCCGCCACCTCCTTCACCGTCTCCTCCTCCTCCTCCTTATGTGTACAAGTCACCGCCACCTCCTTCACCGTCCCCACCACCACCATACGTGTACAAGTCG CCACCACCACCTTCCCCGTCTCCGCCACCACCATATGAGTACAAGTCGCCGCCACCACCTTCCCCGTCTCCACCACCACCATATGAGTACAAATCTCCTC CTCCACCATCACCGTCACCTCCCCCCCCTTACCACCACTCCTCTCCACCACCACCTTCGCCATCTCCTCCTCCACCTTACCACGACTCCTCTCCACCACC ACCTTCGCCATCTCCTCCTCCACCTTACCACGACTCCTCTCCACCACCACCTTCGCCATCTCCTCCTCCACCTTACCACGACTCCTCTCCACCACCACCT TCGCCATCTCCTCCTCCACCTTACCACGACTCCTCTCCACCACCACCTTCGCCATCTCCTCCTCCACCTTACCACGACTCCTCTCCACCACCACCATATG AGTACAAATCTCCTCCTCCACCATCACCGTCACCTCCCCCACCTTACGAGTACAAGTCTCCTCCTCCTCCTTCACCGTCACCACCGCCACCATACTACTA CAAGTCACCGCCGCCACCATCACCCTCTCCTCCTCCACCATACTACTATAAATCTCCACCACCACCTTCTCCATCTCCGCCGCCACCTTACCACTACTCT TCTCCACCACCACCTAAGAAATCACCTCCACCACCATACTACTACAAATCTCCACCACCACCTTCGCCATCTCCTCCTCCACCTTACCACTACTCCTCTC CACCACCACCTAAAAAATCACCTCCACCACCATACTACTATAAGTCTCCACCACCACCTTCACCATCTCCTCCACCACCGTACTACTATAAGTCTCCGCC GCCACCATCACCCTCTCCTCCACCACCATACTATTATAAATCCCCACCACCACCTTCACCATCTCCTCCACCGCCGTACTACTACAAGTCCCCACCACCA CCTTCTCCGTCTCCTCCACCACCATATTACTACAAATCTCCACCACCGCCATCACCATCACCTCCACCACCATACTACTACAAATCTCCACCACCGCCAT CACCATCACCTCCACCACCATACTACTACACATCCCCAAATCTCCACCACCGCCATCACCATCACCTCCACCACCATACTACTACAAATCCCCTCCACCT CCGGCGAAATCTCCCCCACCACCTCCGTACTATTACAAGTCTCCGCCGCCACCTAAGGCTTACCCTCCTCCTTACCACTACACATCACCGCCGCCGCCTG CAATGTTATGACTGGGCTTACCCAAAAAAGTCACACGACAAGAAGCACCTTAAAGGAGCCGTGGTGGAAGTAACTTGCAAGGCAGGGGAAAAGGAAATCA AGGCGTACGGGAAGACCAAAATCAACGGCAAATATAGCATCACCGTCGACGGATTCGAGTACGGCAAATATGGAGCCAAGGCTTGCACAGCTAAGCTTCA CGCGCCGCACAAGGGTTCCAAGTGTAGCATCCCGACCAAGCTTCACGGCGGAAACAAGGGTGCCGAGCTGAAAGTGAAGTCCAAGGATTACCACTTGATT GTGTTGCAGGCTAAGTCGTTTGCTTATGCTCCTAAGAAGCCTTATGCAGAGTGTGAGAAGCCTAAGCCAAAACCCACACCTCCTAGTCCTTACTACTACA AGTCCCCACCTCCTCCTCCTCCAGCTTACGTGTACAAGTCCCCGCCACCACCGGCTTACGTGTACAAGTCTCCGCCCCCTCCTTCACCTAAGCCATACTA CTATAAGTCACCTCCTCCTCCAACTTACGTGTACAAATCACCTCCACCACCGGCTTACGTGTACAAGTCTCCGCCCCCTCCTTCACCTAAGCCATACTAC TATAAGTCACCTCCTCCTCCAACTTACGTGTACAAATCACCTCCACCACCGGCTTACATGTACAAGTCACCGCCACCCCCTTCACCTAAGCCATACTACT ATAAGTCACCCCCTCCTCCGACTTACGTGTACAAGTCACCTCCACCACCTGCTTACGTGTACAAGTCACCGCCACCTCCTTCACCTAAGCCATACTACTA CAAGTCACCACCACCACCATCTCCATCACCGCCGCCTCCTTACTATTACAAGTCTCCACCACCACCGTCGCCTAAGCCATACTACTACAAGTCCCCACCA CCACCATCTCCTTCGCCACCACCACCATACTACTACAAGTCCCCACCGCCGCCATCACCTAAGCCATACTACTATAAATCTCCACCACCACCATCACCTA AGCCATACTACTACAAGTCTCCCCCTCCACCATCTCCTTCACCACCACCACCTTACTACTACAAATCTCCACCACCACCGTCACCTTCCCCACCACCACC TTACTACTACAAATCCCCACCTCCGCCATCACCATCTCCACCACCACCGTACTATTACAAATCTCCCCCACCTCCGTCACCATCACCACCGCCTCCTTCG TACTAG
AA sequence Show only first row Show all	>Lus10026740 pacid=23176538 polypeptide=Lus10026740 locus=Lus10026740.g ID=Lus10026740.BGIv1.0 annot-version=v1.0 MATFGGRRMGLLWPHLAVAVALSILACNVGSADGDAAYVYSSPPPPYEYKSPPPPSPSPPPPYLYKSPPPPSPSPPPPPYVYKSPPPPSPSPPPPYVYKS PPPPSPSPPPPYEYKSPPPPSPSPPPPYEYKSPPPPSPSPPPPYHHSSPPPPSPSPPPPYHDSSPPPPSPSPPPPYHDSSPPPPSPSPPPPYHDSSPPPP SPSPPPPYHDSSPPPPSPSPPPPYHDSSPPPPYEYKSPPPPSPSPPPPYEYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYHYS SPPPPKKSPPPPYYYKSPPPPSPSPPPPYHYSSPPPPKKSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPP PSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYTSPNLHHRHHHHLHHHTTTNPLHLRRNLPHHLRTITSLRRHLRLTLLLTTTHHRRRL QCYDWAYPKKSHDKKHLKGAVVEVTCKAGEKEIKAYGKTKINGKYSITVDGFEYGKYGAKACTAKLHAPHKGSKCSIPTKLHGGNKGAELKVKSKDYHLI VLQAKSFAYAPKKPYAECEKPKPKPTPPSPYYYKSPPPPPPAYVYKSPPPPAYVYKSPPPPSPKPYYYKSPPPPTYVYKSPPPPAYVYKSPPPPSPKPYY YKSPPPPTYVYKSPPPPAYMYKSPPPPSPKPYYYKSPPPPTYVYKSPPPPAYVYKSPPPPSPKPYYYKSPPPPSPSPPPPYYYKSPPPPSPKPYYYKSPP PPSPSPPPPYYYKSPPPPSPKPYYYKSPPPPSPKPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPS Y

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10026740 [exp]	0	1
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10021088 [exp]	1.7	0.9733
AT5G25940			early nodulin-related (.1)		Lus10030052 [exp]	3.0	0.9757
AT3G48660			Protein of unknown function (D...		Lus10003120 [exp]	4.9	0.9735
AT3G08030			Protein of unknown function, D...		Lus10019723 [exp]	5.3	0.9732
					Lus10003802 [exp]	5.7	0.9678
AT2G18670			RING/U-box superfamily protein...		Lus10019979 [exp]	7.1	0.9729
AT3G08030			Protein of unknown function, D...		Lus10016394 [exp]	7.2	0.9635
AT5G51500			Plant invertase/pectin methyle...		Lus10031719 [exp]	8.0	0.9527
AT3G63010		ATGID1B, GID1B	GA INSENSITIVE DWARF1B, alpha/...		Lus10008188 [exp]	8.7	0.9609
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10036725 [exp]	8.7	0.9500

Compare expression of checked genes

Lus10026740 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.