Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57530 770 / 0 ATCPK32, CDPK32, CPK32 calcium-dependent protein kinase 32 (.1) AT5G12480 763 / 0 CPK7 calmodulin-domain protein kinase 7 (.1.2) AT2G41860 759 / 0 CPK14 calcium-dependent protein kinase 14 (.1.2) AT5G19450 756 / 0 CPK8, CDPK19 calcium-dependent protein kinase 19 (.1.2) AT1G74740 679 / 0 CDPK1A, CPK30, ATCPK30 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) AT3G51850 671 / 0 CPK13 calcium-dependent protein kinase 13 (.1) AT1G18890 664 / 0 CPK10, ATCDPK1, AtCPK10 calcium-dependent protein kinase 1 (.1) AT2G31500 613 / 0 CPK24 calcium-dependent protein kinase 24 (.1) AT5G12180 539 / 0 CPK17 calcium-dependent protein kinase 17 (.1) AT3G10660 534 / 0 ATCPK2, CPK2 calmodulin-domain protein kinase cdpk isoform 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042370 [exp] 806 / 0 AT3G57530 820 / 0.0 calcium-dependent protein kinase 32 (.1) Lus10009947 [exp] 768 / 0 AT5G19450 889 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10027361 [exp] 766 / 0 AT5G19450 909 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10014907 [exp] 753 / 0 AT5G19450 896 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10004807 [exp] 679 / 0 AT3G51850 986 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10002482 [exp] 672 / 0 AT3G51850 979 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10027808 [exp] 669 / 0 AT3G51850 962 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10008631 [exp] 663 / 0 AT1G74740 886 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Lus10030134 [exp] 650 / 0 AT5G19450 783 / 0.0 calcium-dependent protein kinase 19 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G054600 [exp] 820 / 0 AT3G57530 864 / 0.0 calcium-dependent protein kinase 32 (.1) Potri.006G052900 [exp] 796 / 0 AT3G57530 863 / 0.0 calcium-dependent protein kinase 32 (.1) Potri.009G052700 [exp] 778 / 0 AT5G19450 903 / 0.0 calcium-dependent protein kinase 19 (.1.2) Potri.001G257100 [exp] 768 / 0 AT5G12480 903 / 0.0 calmodulin-domain protein kinase 7 (.1.2) Potri.015G066200 [exp] 688 / 0 AT1G74740 918 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Potri.012G071700 [exp] 684 / 0 AT1G74740 931 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Potri.016G117200 [exp] 671 / 0 AT3G51850 982 / 0.0 calcium-dependent protein kinase 13 (.1) Potri.006G101300 [exp] 662 / 0 AT3G51850 977 / 0.0 calcium-dependent protein kinase 13 (.1) Potri.007G127000 [exp] 629 / 0 AT2G31500 744 / 0.0 calcium-dependent protein kinase 24 (.1) Potri.006G200600 [exp] 537 / 0 AT5G04870 842 / 0.0 calcium dependent protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10026742 pacid=23176618 polypeptide=Lus10026742 locus=Lus10026742.g ID=Lus10026742.BGIv1.0 annot-version=v1.0 ATGGAAATGGCGGTGGCGGCCGNNAGGGGGGGGGGCGGCCGCCACAAGCAGCATCAGCTGATTGTTTTGAAAGAAGCAACCGGCGGAGACATTCACAAAA GGTACGAGCTTGGTAAGGAGTTGGGAAGGGGGGAGTTTGGGATCACGTATCTGTGTACGGACAAGGAGAGTGGAGCGACTTTTGCCTGCAAGTCAATCTC CAAGAAGAAGCTGCTGACTGCTGTGGATGTAGAAGATGTCAGGAGGGAAGTGGCGATCATGAGACATTTGCCTGTGCATCAAAACTTTGTTACCTTGAAG GATACTTATGAGGACGAAGCTGCTGTGCATTTGGTGATGGAGTTGTGTCAAGGTGGAGAGTTGTTTGACCGGATTATTGCTAGAGGTCATTACACTGAAA GAGCTGCTGCTTCCGTCCTCAAGACCATTGTGGAAGTTGTTCAGATGTGTCATACACATGGAGTAATGCATAGAGATCTAAAGCCTGAGAACTTTTTGTT TGCCAATAAAAAGGAGACTGCGCCTCTCAAGGCCATTGACTTTGGACTGTCAGTATTTTTCAAGCCTGGTGAAACATACACTGAGATTGTGGGAAGTCCA TATTACATGGCTCCTGAAGTGTTGAAACGGAACTACGGCCCTGAAATCGACGTCTGGAGTGCTGGTGTTATACTTTACATCTTACTTTGTGGCGTTCCAC CCTTTTGGGCAGAAACTGAACAAGGAGTTGCACGAGCAATCATTCGATCCAATTTAGATTTCAAGAGAGATCCGTGGCCTAAAGTTTCCGACAATGCAAA AGACCTTGTGAAAAAGATGCTCAACCCTGATCCCAAACGACGCCTCACCGCCCAGGAAGTACTAGATCATCCTTGGCTGCAAAACTCGAGCAGTGCTCCG AATGTGTCCTTGGGGGATGCAGTAAAAGCAAGGCTCAAGCAATTCTCTGCAATGAACAAGCTCAAGAAAAGAGCTTTAAGGGTGATCGCTGAGCGCTTGT CAGTGGAGGAAGCTGCCAGCATCAAGGACGGTTTCCAGCTGATTGATGCTAGAAACATCGGGAAAGTTAACATCGACGATCTGCGTATTGGCTTACAGAA GTTAGGCCATCAAGTCACTGAGGCTGATATTCATAGCCTAATGGAAGCTGGTGATGTTGATGGGGATGGATATCTGGACTATGGAGAGTTTGTGACCATT TCTGTTCACCTAAGGAAGATAGGGAACGATGACCACATTCGCAAAGCTTTCGAGTACTTTGACCAAAACCAAACCGGGCACATCGAAATCGAAGAGCTGC GTGAAGCTTTGGCAGACGATGTCGATGCACAGGGCGAAGAAATTATCAGCGCCATTAAAACAGATGTTGACACGGACAAGGATGGAAAAATAAGCTACGA GGAGTTTGCAGCGATGATGAAAGCCGGTACTGATTGGAGGAAGGCATCAAGGCAGTATTCGAGAGAACGGTTCAGCAATCTTAGTATGACACTAATGGAG GACGGATCTTTGTGGGGGGGCAAAGATTAA
AA sequence Show only first row Show all	>Lus10026742 pacid=23176618 polypeptide=Lus10026742 locus=Lus10026742.g ID=Lus10026742.BGIv1.0 annot-version=v1.0 MEMAVAAXRGGGGRHKQHQLIVLKEATGGDIHKRYELGKELGRGEFGITYLCTDKESGATFACKSISKKKLLTAVDVEDVRREVAIMRHLPVHQNFVTLK DTYEDEAAVHLVMELCQGGELFDRIIARGHYTERAAASVLKTIVEVVQMCHTHGVMHRDLKPENFLFANKKETAPLKAIDFGLSVFFKPGETYTEIVGSP YYMAPEVLKRNYGPEIDVWSAGVILYILLCGVPPFWAETEQGVARAIIRSNLDFKRDPWPKVSDNAKDLVKKMLNPDPKRRLTAQEVLDHPWLQNSSSAP NVSLGDAVKARLKQFSAMNKLKKRALRVIAERLSVEEAASIKDGFQLIDARNIGKVNIDDLRIGLQKLGHQVTEADIHSLMEAGDVDGDGYLDYGEFVTI SVHLRKIGNDDHIRKAFEYFDQNQTGHIEIEELREALADDVDAQGEEIISAIKTDVDTDKDGKISYEEFAAMMKAGTDWRKASRQYSRERFSNLSMTLME DGSLWGGKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57530		ATCPK32, CDPK32...	calcium-dependent protein kina...		Lus10026742 [exp]	0	1
AT1G03590			Protein phosphatase 2C family ...		Lus10033708 [exp]	1.0	0.9702
AT4G30600			signal recognition particle re...		Lus10035066 [exp]	2.4	0.9695
AT2G31570		ATGPX2	glutathione peroxidase 2 (.1)		Lus10027021 [exp]	5.2	0.9566
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Lus10000052 [exp]	5.7	0.9653
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10009169 [exp]	6.9	0.9635
AT1G15530			Concanavalin A-like lectin pro...		Lus10019879 [exp]	7.5	0.9574
AT5G62150			peptidoglycan-binding LysM dom...		Lus10015011 [exp]	11.4	0.9631
AT3G51660			Tautomerase/MIF superfamily pr...		Lus10000344 [exp]	12.0	0.9428
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10015519 [exp]	12.2	0.9417
AT3G56200			Transmembrane amino acid trans...		Lus10042864 [exp]	13.4	0.9438

Compare expression of checked genes

Lus10026742 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.