Plant FIBer expression Database

Lus10026743 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G43180 597 / 0 Phosphoenolpyruvate carboxylase family protein (.1.2.3.4)
AT1G77060 188 / 2e-55 Phosphoenolpyruvate carboxylase family protein (.1)
AT1G21440 181 / 8e-53 Phosphoenolpyruvate carboxylase family protein (.1)
AT3G21720 62 / 4e-10 ICL isocitrate lyase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025529
[exp]
857 / 0 AT2G43180 608 / 0.0 Phosphoenolpyruvate carboxylase family protein (.1.2.3.4)
Lus10015122
[exp]
61 / 2e-09 AT3G21720 1003 / 0.0 isocitrate lyase (.1)
Lus10031552
[exp]
61 / 2e-09 AT3G21720 998 / 0.0 isocitrate lyase (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G231000
[exp]
722 / 0 AT2G43180 589 / 0.0 Phosphoenolpyruvate carboxylase family protein (.1.2.3.4)
Potri.002G073600
[exp]
74 / 3e-15 AT1G77060 214 / 3e-70 Phosphoenolpyruvate carboxylase family protein (.1)
Potri.007G122900
[exp]
61 / 1e-09 AT3G21720 951 / 0.0 isocitrate lyase (.1)
Potri.017G036900
[exp]
61 / 1e-09 AT3G21720 924 / 0.0 isocitrate lyase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0151 PK_TIM PF00463 ICL Isocitrate lyase family
Representative CDS sequence
>Lus10026743 pacid=23176535 polypeptide=Lus10026743 locus=Lus10026743.g ID=Lus10026743.BGIv1.0 annot-version=v1.0
ATGAAGGCACTAACCCAAATTCCTGTTGCTCATCCTTCTTTCTCCCAATCCTCTCTACCATCCTCATCATACCCCACCTTCTCCTTACCATTCCCTTCTT
CTTCTTCTTCCAACTTCAAACCCCGCAACTCCCTTTTGCTCTTCAACAACAATGTCTTCAGCGCCACAAAACGACGTATAACAAGAGCCACCAGAGTAAT
CTGTTCTGCTTCTGACTCGCCGGCAAAGACTCTCCGATCCATCCTCGATACGTCTGGGGTTCACCAAGGCCCTGCTTGTTTCGACGCTCTCAGCGCTAAG
CTTGTTGAGAAATCCGGATTTCTCTTCTGCTTTACCAGTGGGTTTTCAATATCAGCTGCTAGATTGGGGCTGCCTGATACTGGATTCATATCCTATGGGG
AAATTGTGGATCAAGGGCAGCAAATCACTCAAGCTGTGTCAATCCCTGTTATTGGAGATGGTGATAATGGATATGGGAATGCCATGAGTGTTAAAAGGAC
GGTCAAGGGATACATTAAAGCTGGTTTTGCTGGCATCATTCTTGAAGACCAGGTGTCTCCAAAAGCTTGTGGCCATACCCACGGTAGGAAAGTGGTATCG
CGAGAAGAGGCAGTGATGAGGATTAAAGCAGCTGTTGATGCGCGGCAGGAATCTGGATCTGACATAGTGATTGTCGCACGAACTGATTCTCGTCAAGCAA
TTTCCTTGGACGAAGCACTCTGGAGGTCCAGTGCTTTTGCTGAAGCTGGTGCGGATGTCCTTTTCATTGATGCATTAGGTTCAATTGAAGAAATGAGAGC
TTTCTGTGACGTATCTCCTCAAGTTCCAAAAATGGCCAATATGCTTGAAGGAGGTGGTAAAACTCCCATACTCAACCCCTTGGAGCTGGAGGAGATTGGC
TACAAGCTTGTGGCGTATCCACTTTCCTTGATTGGAGTCTCCATGCAAGCAATGCAGGATGCACTTACTGCCATTAAGGGAGGCCGGATTCCTCCTCCTG
GAAGTATGCCTTCATTTGAGGAAATAAAGGAAACCTTAGGGTTCAATGCTTACTATGAAGAAGAGAAGCGGTATGCTACTAGCAGCAGCTCAGTTTCCAG
GCAGCCAGCAAGCAGTAATGTTTATTCTGTACAACGGAGGGATCAAGATGATAAAGAACAAAGAAGTGAAAGTCCCCAAGAGCCTGTTGTGGAAGTGATT
ACTCCTGATGTATACAATGCCTATGGTGCAGATGGTTCCAGAGGTCCCTTTTCTGGAATCTGGTCGCGGACATTGAGGGTTAAAATAACTGGCAATGATG
GGTTTGAGAAACTTGACGTTAGAATTCCTGCTGGTTTCTTGGATGGAATAACTAACATCGTACCGGCTTTGGGAGGTGTCAACATCAAAGAACTATTGGA
TGAGGCGGCCGGTGAAGCAGGAGGCAAGCTGCTGTTGGATTTCAAAGACACGGTGGGCGACAGAATTCAAGTCTTCCTAGAGTGA
AA sequence
>Lus10026743 pacid=23176535 polypeptide=Lus10026743 locus=Lus10026743.g ID=Lus10026743.BGIv1.0 annot-version=v1.0
MKALTQIPVAHPSFSQSSLPSSSYPTFSLPFPSSSSSNFKPRNSLLLFNNNVFSATKRRITRATRVICSASDSPAKTLRSILDTSGVHQGPACFDALSAK
LVEKSGFLFCFTSGFSISAARLGLPDTGFISYGEIVDQGQQITQAVSIPVIGDGDNGYGNAMSVKRTVKGYIKAGFAGIILEDQVSPKACGHTHGRKVVS
REEAVMRIKAAVDARQESGSDIVIVARTDSRQAISLDEALWRSSAFAEAGADVLFIDALGSIEEMRAFCDVSPQVPKMANMLEGGGKTPILNPLELEEIG
YKLVAYPLSLIGVSMQAMQDALTAIKGGRIPPPGSMPSFEEIKETLGFNAYYEEEKRYATSSSSVSRQPASSNVYSVQRRDQDDKEQRSESPQEPVVEVI
TPDVYNAYGADGSRGPFSGIWSRTLRVKITGNDGFEKLDVRIPAGFLDGITNIVPALGGVNIKELLDEAAGEAGGKLLLDFKDTVGDRIQVFLE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G43180 Phosphoenolpyruvate carboxylas... Lus10026743
[exp]
0 1
AT5G64860 DPE1 disproportionating enzyme (.1) Lus10036628
[exp]
2.2 0.8314
AT3G12020 P-loop containing nucleoside t... Lus10016236
[exp]
14.1 0.7867
AT2G38330 MATE efflux family protein (.1... Lus10002856
[exp]
16.6 0.7875
AT4G24560 UBP16 ubiquitin-specific protease 16... Lus10015893
[exp]
17.0 0.7623
AT1G29120 Hydrolase-like protein family ... Lus10013909
[exp]
21.6 0.7460
AT1G10760 GWD1, GWD, SOP1... STARCH EXCESS 1, Pyruvate phos... Lus10013044
[exp]
28.5 0.7748
AT5G47900 Protein of unknown function (D... Lus10000090
[exp]
28.9 0.7686
AT2G26100 Galactosyltransferase family p... Lus10023955
[exp]
34.3 0.7823
AT5G44750 ATREV1, REV1 ARABIDOPSIS THALIANA HOMOLOG O... Lus10013870
[exp]
40.2 0.7519
AT2G35100 ARAD1 ARABINAN DEFICIENT 1, Exostosi... Lus10038355
[exp]
40.2 0.7619

Lus10026743 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.